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(-) Description

Title :  STRUCTURE OF HUMAN PARP2 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
 
Authors :  E. Casale, M. Fasolini, G. Papeo, H. Posteri, D. Borghi, A. A. Busel, F. C M. Ciomei, A. Cirla, E. Corti, M. Danello, M. Fasolini, E. R. Felder, B. A. Galvani, A. Isacchi, A. Khvat, M. Y. Krasavin, R. Lupi, P. Orsini, R. E. Pesenti, D. Pezzetta, S. Rainoldi, F. Riccardisirtori, A. Scolaro F. Zuccotto, D. Donati, A. Montagnoli
Date :  15 Apr 15  (Deposition) - 12 Aug 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. M. E. Papeo, H. Posteri, D. Borghi, A. A. Busel, F. Caprera, E. Casale M. Ciomei, A. Cirla, E. Corti, M. D'Anello, M. Fasolini, B. Forte, A. Galvani, A. Isacchi, A. Khvat, M. Y. Krasavin, R. Lupi, P. Orsini, R. Perego, E. Pesenti, D. Pezzetta, S. Rainoldi, F. Riccardi-Sirtori A. Scolaro, F. Sola, F. Zuccotto, E. R. Felder, D. Donati, A. Montagnol
Discovery Of 2-[1-(4, 4-Difluorocyclohexyl)Piperidin-4-Yl]-6- Fluoro-3-Oxo-2, 3-Dihydro-1H-Isoindole-4-Carboxamide (Nms- P118): A Potent, Orally Available And Highly Selective Parp- 1 Inhibitor For Cancer Therapy.
J. Med. Chem. V. 58 6875 2015
PubMed-ID: 26222319  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00680

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 2
    ChainsA
    EC Number2.4.2.30
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentCATALYTIC DOMAIN, UNP RESIDUES 223-583
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPARP-2, HPARP-2, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LI KE 2, ARTD2, NAD(+) ADP-RIBOSYLTRANSFERASE 2, ADPRT-2, POLYADP-RIB OSE SYNTHASE 2, PADPRT-2, PARP-2, HPARP-2, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 2, ARTD2, NAD(+) ADP-RIBOSYLTRANSFERASE 2, A DPRT-2, POLYADP- RIBOSE SYNTHASE 2, PADPRT-2, POLY ADP-RIBOSE POLY MERASE 2, POLY ADP-RIBOSE POLYMERASE 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1D7N1Ligand/Ion2-[1-(4,4-DIFLUOROCYCLOHEXYL)-PIPERIDIN-4-YL]-6-FLUORO-3-OXO-2,3-DIHYDRO-1H-ISOINDOLE-4-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:328 , ILE A:331 , GLN A:332 , HIS A:428 , GLY A:429 , GLY A:454 , TYR A:455 , TYR A:462 , PHE A:463 , ALA A:464 , LYS A:469 , SER A:470 , TYR A:473 , GLU A:558BINDING SITE FOR RESIDUE D7N A1584

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZZY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:539 -Pro A:540

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZZY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZZY)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZZY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhheeeee....hhhhhhhhhhhhhh.......eeeeeeeeeeeee.hhhhhh......eeeeeee.hhhhhhhhhhhh........hhhhh.....eee..hhhhhhhhhh......eeeeeeeeee...eeee.......hhhhh...eeee...ee.hhhhheee..eee.....ee............eeee.hhh.eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zzy A 231 ESQLDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASDTGILNGYTLNYNEYIVYNPNQVRMRYLLKVQFNFLQLW 583
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                                                                                                                                                                                                                                                                                                                                                       548|                                
                                                                                                                                                                                                                                                                                                                                                        551                                

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZZY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZZY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZZY)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARP2_HUMAN | Q9UGN53kcz 3kjd 4pjv 4tvj 4zzx 5d5k 5dsy

(-) Related Entries Specified in the PDB File

4zzx STRUCTURE OF PARP2 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
4zzz STRUCTURE OF HUMAN PARP1 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR
5a00 STRUCTURE OF HUMAN PARP1 CATALYTIC DOMAIN BOUND TO AN ISOINDOLINONE INHIBITOR