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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 1
 
Authors :  S. Sogabe, K. Ida, W. Lane, G. Snell
Date :  13 Feb 17  (Deposition) - 24 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription Repressor, Transcription-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kamada, N. Sakai, S. Sogabe, K. Ida, H. Oki, K. Sakamoto, W. Lane, G. Snell, M. Iida, Y. Imaeda, J. Sakamoto, J. Matsui
Discovery Of A B-Cell Lymphoma 6 Protein-Protein Interactio Inhibitor By A Biophysics-Driven Fragment-Based Approach
J. Med. Chem. V. 60 4358 2017
PubMed-ID: 28471657  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00313

(-) Compounds

Molecule 1 - B-CELL LYMPHOMA 6 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 5-129
    Gene: BCL6, BCL5, LAZ3, ZBTB27, ZNF51
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
17ZF1Ligand/IonN-PHENYL-1,3,5-TRIAZINE-2,4-DIAMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:21 , ARG A:24 , LEU A:25 , MET A:51 , GLY A:55 , TYR A:58 , HOH A:905 , HOH A:973binding site for residue 7ZF A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5X4M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5X4M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5X4M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5X4M)

(-) Exons   (0, 0)

(no "Exon" information available for 5X4M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee.hhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhh..hhhhh.eee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5x4m A  -1 NLYFQGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE 129
                                     8        18        28        38        48        58        68        78        88        98       108       118       128
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5X4M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5X4M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5X4M)

(-) Gene Ontology  (59, 59)

Asymmetric/Biological Unit(hide GO term definitions)

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  BCL6_HUMAN | P41182
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCL6_HUMAN | P41182: 1r28 1r29 1r2b 2en2 2eos 2lce 2yrm 3bim 3e4u 3lbz 4cp3 4u2m 5h7g 5h7h 5n1x 5n1z 5n20 5n21 5x4n 5x4o 5x4p 5x4q

(-) Related Entries Specified in the PDB File

5x4n 5x4o 5x4p 5x4q