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(-) Description

Title :  CRYSTAL STRUCTURE OF A COMPLEX OF THE MIZ1- AND BCL6 POZ DOMAINS.
 
Authors :  M. A. Stead, S. C. Wright
Date :  17 Jul 14  (Deposition) - 10 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Poz Domain, Btb Domain, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Stead, S. C. Wright
Structures Of Heterodimeric Poz Domains Of Miz1/Bcl6 And Miz1/Nac1.
Acta Crystallogr. , Sect. F V. 70 1591 2014
PubMed-ID: 25484205  |  Reference-DOI: 10.1107/S2053230X14023449

(-) Compounds

Molecule 1 - ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 17,B-CELL LYMPHOMA 6 PROTEIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPGEX-6P-1
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentPOZ DOMAIN, UNP RESIDUES 2-115,POZ DOMAIN, UNP RESIDUES 5- 129
    GeneZBTB17, MIZ1, ZNF151, ZNF60, BCL6, BCL5, LAZ3, ZBTB27, ZNF51
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMYC-INTERACTING ZINC FINGER PROTEIN 1,MIZ-1,ZINC FINGER PROTEIN 151,ZINC FINGER PROTEIN 60,BCL-6,B-CELL LYMPHOMA 5 PROTEIN, BCL-5,PROTEIN LAZ-3,ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27, ZINC FINGER PROTEIN 51

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U2M)

(-) Sites  (0, 0)

(no "Site" information available for 4U2M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U2M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U2M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U2M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U2M)

(-) Exons   (0, 0)

(no "Exon" information available for 4U2M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh....eee....eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhheeee...hhhhhhhhhhhh.hhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhh........eee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u2m A   2 DFPQHSQHVLEQLNQQRQLGLLCDCTFVGVHFKAHKAVLAACSEYFKMLFVDQNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 250
                                    11        21       |33        43        53  ||    72        82        92       102       112  ||   132       142       152       162       172       182       192       202       212       222       232       242        
                                                      29|                      56|                                              115|                                                                                                                            
                                                       32                       66                                               126                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh....eeeee..eeeeehhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhheeee...hhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhh........eee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u2m B  -1 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 250
                                     8        18        28        38        48        60        70        80        90       100       110    || 130       140       150       160       170       180       190       200       210       220       230       240       250
                                                                                     57|                                                    115|                                                                                                                            
                                                                                      60                                                     126                                                                                                                            

Chain C from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....eeeee..eeeeehhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhheeee...hhhhhhhhhhhh.hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhh........eee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u2m C   1 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 250
                                    10        20        30        40        50    ||  67        77        87        97       107       127       137       147       157       167       177       187       197       207       217       227       237       247   
                                                                                 55|                                                 115|                                                                                                                            
                                                                                  63                                                  126                                                                                                                            

Chain D from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....eeeee..eeeeehhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhheeee...hhhhhhhhhhhh.hhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhh........eee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u2m D   1 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 250
                                    10        20        30        40        50        60        70        80        90       100       110    || 130       140       150       160       170       180       190       200       210       220       230       240       250
                                                                                                                                            115|                                                                                                                            
                                                                                                                                             126                                                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U2M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U2M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U2M)

(-) Gene Ontology  (67, 76)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCL6_HUMAN | P411821r28 1r29 1r2b 2en2 2eos 2lce 2yrm 3bim 3e4u 3lbz 4cp3 5h7g 5h7h 5n1x 5n1z 5n20 5n21 5x4m 5x4n 5x4o 5x4p 5x4q
        ZBT17_HUMAN | Q131052lvr 2lvt 2lvu 2m0d 2m0e 2m0f 2n25 2n26 2q81 3m52 4u2n 5ion

(-) Related Entries Specified in the PDB File

4u2n