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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSE MODIFIED SIGNALING PROTEIN FROM BUFALLO (SPB-40) AT 1.65 A RESOLUTION.
 
Authors :  P. K. Singh, A. Chaudhary, P. Kaur, S. Sharma, T. P. Singh
Date :  07 Dec 16  (Deposition) - 28 Dec 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Singh, A. Chaudhary, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Ribose Modified Signaling Protein From Bufallo (Spb-40) At 1. 65 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHITINASE-3-LIKE PROTEIN 1
    Chains: A
    Fragment: UNP RESIDUES 22-383
    Organism Common: DOMESTIC WATER BUFFALO
    Organism Scientific: BUBALUS BUBALIS
    Organism Taxid: 89462
    Synonym: MAMMARY GLAND PROTEIN 40,SPB-40

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3RIB2Ligand/IonRIBOSE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:269 , LYS A:270 , ILE A:272 , MPD A:404 , HOH A:515 , HOH A:518binding site for residue RIB A 402
2AC2SOFTWAREPHE A:37 , TRP A:78 , LEU A:119 , TYR A:185 , TRP A:331 , HOH A:503binding site for residue RIB A 403
3AC3SOFTWARETRP A:10 , ARG A:14 , TRP A:331 , LEU A:335 , RIB A:402 , HOH A:553binding site for residue MPD A 404
4AC4SOFTWAREASN A:39 , ILE A:40 , SER A:41 , ARG A:84 , HOH A:505 , HOH A:739binding site for Mono-Saccharide NAG A 401 bound to ASN A 39

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:5 -A:30
2A:279 -A:343

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:36 -Phe A:37
2Leu A:119 -Tyr A:120
3Trp A:331 -Ala A:332

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5WSJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhh.hhhhh......eeeeeeeeee..eee....hhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhhhhhhhhhhhhhhh.eeeee.....hhhhh....................hhhhhhhhhhhh..hhh.eeeeee..eeeeee..........eeee...........eehhhhhhhhh...eeeee....eeeeee..eeee..hhhhhhhhhhhhhhh...eeeeehhhhh............hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wsj A   1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGGWNFGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWRDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSYTLASSKTDVGAPISGPGIPGQFTKEKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLAFPLTNAIKDVLAGV 362
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                                                                                                                                                                                                                                           210|                                                                                                                                                      
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WSJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WSJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WSJ)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  CH3L1_BUBBU | Q7YS85
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CH3L1_BUBBU | Q7YS85: 1tfv 2o9o 2qf8 4mav 4ml4 4mpk 4mtv 4nsb 4q7n 4s06 5wsi 5wsm

(-) Related Entries Specified in the PDB File

5wsi 5wsm