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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF SIGNALING GLYCOPROTEIN, SPB-40 AND N-ACETYL SALICYLIC ACID AT 3.05 A RESOLUTION
 
Authors :  S. Yamini, A. Chaudhary, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Date :  28 Nov 13  (Deposition) - 11 Dec 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Spb-40, Tim Barrel, N-Acetyl Salicylic Acid, Signalling Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yamini, A. Chaudhary, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Signaling Glycoprotein, Spb-40 And N-Acetyl Salicylic Acid At 3. 05 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHITINASE-3-LIKE PROTEIN 1
    Chains: A
    Organism Common: DOMESTIC WATER BUFFALO, RIVER BUFFALO
    Organism Scientific: BUBALUS BUBALIS
    Organism Taxid: 89462
    Strain: BUBALUS BUBALIS
    Synonym: MAMMARY GLAND PROTEIN 40, SPB-40

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1AIN1Ligand/Ion2-(ACETYLOXY)BENZOIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:10 , ARG A:14 , TRP A:269 , TRP A:331BINDING SITE FOR RESIDUE AIN A 402
2AC2SOFTWAREASN A:39 , ILE A:40 , SER A:41 , TRP A:48 , ARG A:84 , HOH A:510 , HOH A:561 , HOH A:570BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 39

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:5 -A:30
2A:279 -A:343

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:36 -Phe A:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NSB)

(-) Exons   (0, 0)

(no "Exon" information available for 4NSB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhh.hhhhh......eeeeeeeeee..eee....hhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhhhhh.eeeee..............................hhhhhhhhhhhhh.hhh.eeeeee.eeeeeee..........eeee............eehhhhhhhh...eeeee....eeeeee..eeee..hhhhhhhhhhhhhhh...eeeeehhhhh............hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsb A   1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWRDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAIKDVLARV 362
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                                                                                                                                                                                                                                           210|                                                                                                                                                      
                                                                                                                                                                                                                                            212
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NSB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NSB)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  CH3L1_BUBBU | Q7YS85
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CH3L1_BUBBU | Q7YS85: 1tfv 2o9o 2qf8 4mav 4ml4 4mpk 4mtv 4q7n 4s06 5wsi 5wsj 5wsm

(-) Related Entries Specified in the PDB File

2o9o