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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF BUFFALO SIGNALLING GLYCOPROTEIN WITH PENTASACCHARIDE AT 2.8A RESOLUTION
 
Authors :  P. K. Shukla, A. Chaudhary, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P
Date :  20 Sep 13  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. K. Shukla, A. Chaudhary, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Buffalo Signalling Glycoprotein With Pentasaccharide At 2. 8A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHITINASE-3-LIKE PROTEIN 1
    Chains: A
    Organism Common: WATER BUFFALO
    Organism Scientific: BUBALUS BUBALIS
    Organism Taxid: 89462
    Synonym: MAMMARY GLAND PROTEIN 40, SPB-40

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:39 , ILE A:40 , SER A:41 , TRP A:48 , HOH A:530BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 39
2AC2SOFTWARETYR A:6 , TRP A:10 , TYR A:13 , PHE A:37 , TRP A:48 , GLU A:49 , TRP A:50 , GLY A:77 , TRP A:78 , ASN A:79 , LEU A:119 , TYR A:185 , TRP A:269 , ILE A:272 , TRP A:331 , HOH A:523 , HOH A:578BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 402 TO 406

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:5 -A:30
2A:279 -A:343

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:36 -Phe A:37
2Leu A:119 -Trp A:120
3Trp A:331 -Ala A:332

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MTV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MTV)

(-) Exons   (0, 0)

(no "Exon" information available for 4MTV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4mtva1 A:1-240,A:309-362 Signal processing protein (SPC-40, MGP-40)                                                                                                                                                                           d4mtva2 A:241-308 Signal processing protein (SPC-40, MGP-40)        d4mtva1 A:1-240,A:309-362                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhh.hhhhh......eeeeeeeeee..eee....hhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhh.eeee...............................hhhhhhhhhhhh..hhh.eeeeee.eeeeeee..........eeee...........eeehhhhhhhhh..eeeee....eeeeee..eeee..hhhhhhhhhhhhhhh...eeeeehhhhh............hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mtv A   1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWRDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAIKDVLARV 362
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210|      221       231       241       251       261       271       281       291       301       311       321       331       341       351       361 
                                                                                                                                                                                                                                           210|                                                                                                                                                      
                                                                                                                                                                                                                                            212
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MTV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MTV)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  CH3L1_BUBBU | Q7YS85
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CH3L1_BUBBU | Q7YS85: 1tfv 2o9o 2qf8 4mav 4ml4 4mpk 4nsb 4q7n 4s06 5wsi 5wsj 5wsm

(-) Related Entries Specified in the PDB File

2o9o