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(-) Description

Title :  CRYSTAL STRUCTURE OF A CUPIN PROTEIN (TM1459) IN OSMIUM (OS)-SUBSTITUTED FORM II
 
Authors :  N. Fujieda, T. Nakano, Y. Taniguchi, H. Ichihashi, Y. Nishikawa, G. Kur S. Itoh
Date :  06 Dec 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.11
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Cupin Fold, Artificial Metalloenzyme, Metal Binding, 4 Histidine Motif, Osmium, Os, Platinum Group Metal, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Fujieda, T. Nakano, Y. Taniguchi, H. Ichihashi, H. Sugimoto, Y. Morimoto, Y. Nishikawa, G. Kurisu, S. Itoh
A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc. 2017
PubMed-ID: 28340294  |  Reference-DOI: 10.1021/JACS.7B00675

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN TM1459
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM_1459, TMARI_1465
    Organism Scientific: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2OS4Ligand/IonOSMIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2OS-1Ligand/IonOSMIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2OS-1Ligand/IonOSMIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:52 , HIS A:54 , HIS A:58 , HIS A:92 , HOH A:319 , HOH A:336binding site for residue OS A 201
2AC2SOFTWAREHIS B:52 , HIS B:54 , HIS B:58 , HIS B:92 , HOH B:317 , HOH B:348binding site for residue OS B 201
3AC3SOFTWAREHIS C:52 , HIS C:54 , HIS C:58 , HIS C:92 , HOH C:315 , HOH C:361binding site for residue OS C 201
4AC4SOFTWAREHIS D:52 , HIS D:54 , HIS D:58 , HIS D:92 , HOH D:323 , HOH D:343binding site for residue OS D 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WSF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5WSF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WSF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WSF)

(-) Exons   (0, 0)

(no "Exon" information available for 5WSF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhh..eeeee..eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeee....eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5wsf A   1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                    10        20        30        40        50        60        70        80        90       100     | 110    
                                                                                                                                   106-CSD    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhh..eee....eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeee....eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5wsf B   1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                    10        20        30        40        50        60        70        80        90       100     | 110    
                                                                                                                                   106-CSD    


Chain C from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhh......eeeeeee.......eeeeeeee....eeeee.....eeeeeee.eeeeee...eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 5wsf C   1 MILKRAYDVTPQKRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                    10  ||    26        36        46        56        66        76        86        96       106        
                                       13|                                                                                   106-CSD    
                                        20                                                                                              


Chain D from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhh....eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeee....eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5wsf D   1 MILKRAYDVTPQKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                    10 ||     25        35        45        55        65        75        85        95       105|        
                                      12|                                                                                     106-CSD    
                                       18
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WSF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WSF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WSF)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9X1H0_THEMA | Q9X1H0: 5wsd 5wse
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        Q9X1H0_THEMA | Q9X1H0: 1vj2

(-) Related Entries Specified in the PDB File

5wsd 5wse