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(-) Description

Title :  CRYSTAL STRUCTURE OF A CUPIN PROTEIN (TM1459) IN APO FORM
 
Authors :  N. Fujieda, T. Nakano, Y. Taniguchi, H. Ichihashi, Y. Nishikawa, G. Kur S. Itoh
Date :  06 Dec 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cupin Fold, Artificial Metalloenzyme, Metal Binding, 4 Histidine Motif, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Fujieda, T. Nakano, Y. Taniguchi, H. Ichihashi, H. Sugimoto, Y. Morimoto, Y. Nishikawa, G. Kurisu, S. Itoh
A Well-Defined Osmium-Cupin Complex: Hyperstable Artificial Osmium Peroxygenase
J. Am. Chem. Soc. 2017
PubMed-ID: 28340294  |  Reference-DOI: 10.1021/JACS.7B00675

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN TM1459
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TM_1459, TMARI_1465
    Organism Scientific: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE

(-) Sites  (0, 0)

(no "Site" information available for 5WSD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WSD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5WSD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WSD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WSD)

(-) Exons   (0, 0)

(no "Exon" information available for 5WSD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhh..eeeee..eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeeee...eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 5wsd A  -3 GPSGMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                     6        16        26        36        46        56        66        76        86        96       106        
                                                                                                                                       106-CSD    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhh..eee....eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeee....eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5wsd B   1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLcLIPKEGGE 114
                                    10        20        30        40        50        60        70        80        90       100     | 110    
                                                                                                                                   106-CSD
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WSD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WSD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WSD)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9X1H0_THEMA | Q9X1H0: 5wse 5wsf
UniProtKB/TrEMBL
        Q9X1H0_THEMA | Q9X1H0: 1vj2

(-) Related Entries Specified in the PDB File

5wse 5wsf