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(-) Description

Title :  CRYSTAL STRUCTURE OF A NOVEL FAMILY OF MANGANESE-CONTAINING CUPIN (TM1459) FROM THERMOTOGA MARITIMA AT 1.65 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  03 Dec 03  (Deposition) - 09 Dec 03  (Release) - 23 Mar 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Novel Manganese-Containing Cupin, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Jaroszewski, R. Schwarzenbacher, F. Von Delft, D. Mcmullan, L. S. Brinen, J. M. Canaves, X. Dai, A. M. Deacon, M. Didonato, M. A. Elsliger, S. Eshagi, R. Floyd, A. Godzik, C. Grittini, S. K. Grzechnik, E. Hampton, I. Levin, C. Karlak, H. E. Klock, E. Koesema, J. S. Kovarik, A. Kreusch, P. Kuhn, S. A. Lesley, T. M. Mcphillips, M. D. Miller, A. Morse, K. Moy, J. Ouyang, R. Page, K. Quijano, R. Reyes, F. Rezezadeh, A. Robb, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, X. Wang, B. West, G. Wolf, Q. Xu, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of A Novel Manganese-Containing Cupin (Tm1459) From Thermotoga Maritima At 1. 65 A Resolution.
Proteins V. 56 611 2004
PubMed-ID: 15229893  |  Reference-DOI: 10.1002/PROT.20130

(-) Compounds

Molecule 1 - NOVEL MANGANESE-CONTAINING CUPIN TM1459
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1459
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:52 , HIS A:54 , HIS A:58 , HIS A:92 , HOH A:124 , HOH A:135BINDING SITE FOR RESIDUE MN A 115
2AC2SOFTWAREHIS B:52 , HIS B:54 , HIS B:58 , HIS B:92 , HOH B:137 , HOH B:161BINDING SITE FOR RESIDUE MN B 115
3AC3SOFTWAREILE A:49 , PHE A:94 , PHE A:104 , CYS A:106 , HOH A:124 , HOH A:175 , HOH A:190BINDING SITE FOR RESIDUE UNL A 116

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VJ2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VJ2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VJ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VJ2)

(-) Exons   (0, 0)

(no "Exon" information available for 1VJ2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with Q9X1H0_THEMA | Q9X1H0 from UniProtKB/TrEMBL  Length:114

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         Q9X1H0_THEMA     1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE 114
               SCOP domains d1vj2a_ A: Hypothetical protein TM1459                                                                             SCOP domains
               CATH domains 1vj2A00 A:1-114 Jelly Rolls                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhh..eee....eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeee....eeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1vj2 A   1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with Q9X1H0_THEMA | Q9X1H0 from UniProtKB/TrEMBL  Length:114

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         Q9X1H0_THEMA     1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE 114
               SCOP domains d1vj2b_ B: Hypothetical protein TM1459                                                                             SCOP domains
               CATH domains 1vj2B00 B:1-114 Jelly Rolls                                                                                        CATH domains
           Pfam domains (1) --------------------------------------Cupin_2-1vj2B01 B:39-108                                              ------ Pfam domains (1)
           Pfam domains (2) --------------------------------------Cupin_2-1vj2B02 B:39-108                                              ------ Pfam domains (2)
         Sec.struct. author .eeee.hhh..eeee...eeeeeeeeee.......eeeeeeeeeeeeeeeee.....eeeeeee.eeeeee..eeeeee..eeeee.....eeee......eeeeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1vj2 B   1 MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE 114
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9X1H0_THEMA | Q9X1H0)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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        Q9X1H0_THEMA | Q9X1H0: 5wsd 5wse 5wsf

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