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(-) Description

Title :  STRUCTURAL INSIGHTS INTO LIPOPROTEIN N-ACYLATION BY ESCHERICHIA COLI APOLIPOPROTEIN N-ACYLTRANSFERASE
 
Authors :  J. M. Murray, C. L. Noland
Date :  10 May 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym./Biol. Unit :  A
Keywords :  Lnt, Acyl Transferase, Membrane Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. L. Noland, M. Kattke, J. Diao, S. Gloor, H. Pantua, M. Reichelt, A. Katakam, D. Yan, J. Kang, I. Zilberleyb, M. Xu, S. Kapadia, J. M. Murray
Structural Insights Into Lipoprotein N-Acylation By Escherichia Coli Apolipoprotein N-Acyltransferase
Proc. Natl. Acad. Sci. Usa 2017
PubMed: search  |  Reference-DOI: 10.1073/PNAS.1707813114

(-) Compounds

Molecule 1 - APOLIPOPROTEIN N-ACYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LNT, CUTE, B0657, JW0654
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2LNK1Ligand/IonPENTANE
3OLC1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4PLM5Ligand/IonPALMITIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:79 , TRP A:237 , GLY A:342 , GLU A:343 , PHE A:365 , TRP A:415 , PLM A:607binding site for residue OLC A 601
2AC2SOFTWARELEU A:143 , PRO A:346 , LEU A:347binding site for residue LNK A 602
3AC3SOFTWARELEU A:19 , ALA A:22 , CYS A:23 , THR A:25 , LEU A:26 , TYR A:31 , SER A:70 , ASN A:73binding site for residue PLM A 603
4AC4SOFTWARELEU A:54 , LEU A:103 , LEU A:107 , TYR A:210 , GLN A:212 , GLN A:455 , HOH A:718binding site for residue PLM A 604
5AC5SOFTWAREPHE A:92 , TRP A:121 , MET A:178 , ARG A:193binding site for residue PLM A 605
6AC6SOFTWAREILE A:7 , GLU A:8 , ARG A:13 , ALA A:46 , ASN A:50 , THR A:119 , VAL A:188binding site for residue PLM A 606
7AC7SOFTWARELEU A:97 , LEU A:143 , PHE A:146 , PHE A:416 , OLC A:601binding site for residue PLM A 607
8AC8SOFTWARELYS A:236 , TRP A:237 , ASN A:412binding site for residue CL A 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VRG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:29 -Pro A:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VRG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VRG)

(-) Exons   (0, 0)

(no "Exon" information available for 5VRG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:494
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...ee.hhhheeeeeee...hhhhhh...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee...hhhhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeee...........eee..............................eee..eeeeeee.hhhhhhhhhhhhh.....eeeeeehhhhhh..hhhhhhhhhhhhhhhhhh..eeeee.....eee.....eeee......eeeeeee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vrg A   4 ASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSL 507
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503    
                                                                                                                                                                                                                                                                                                                                                                                      352|                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                       363
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VRG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VRG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VRG)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5VRG)

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    Ser A:29 - Pro A:30   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LNT_ECOLI | P23930: 5n6h 5n6l 5vrh

(-) Related Entries Specified in the PDB File

5vrh