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(-) Description

Title :  STRUCTURE OF THE MEMBRANE INTEGRAL LIPOPROTEIN N-ACYLTRANSFERASE LNT C387A MUTANT FROM E. COLI
 
Authors :  C. -Y. Huang, C. Boland, N. Howe, M. Wiktor, L. Volgeley, D. Weichert, J. V. Olieric, M. Wang, M. Caffrey
Date :  15 Feb 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Membrane Protein, Lipoprotein, N-Acyltransferase, Lipidic Cubic Phase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wiktor, D. Weichert, N. Howe, C. Y. Huang, V. Olieric, C. Boland, J. Bailey, L. Vogeley, P. J. Stansfeld, N. Buddelmeijer, M. Wang, M. Caffrey
Structural Insights Into The Mechanism Of The Membrane Integral N-Acyltransferase Step In Bacterial Lipoprotein Synthesis.
Nat Commun V. 8 15952 2017
PubMed-ID: 28675161  |  Reference-DOI: 10.1038/NCOMMS15952

(-) Compounds

Molecule 1 - APOLIPOPROTEIN N-ACYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell: C43
    Expression System Taxid: 562
    Gene: LNT, CUTE, B0657, JW0654
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 39)

Asymmetric Unit (2, 39)
No.NameCountTypeFull Name
1GOL12Ligand/IonGLYCEROL
2OLC27Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
Biological Unit 1 (2, 27)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2OLC19Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2OLC8Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (39, 39)

Asymmetric Unit (39, 39)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:22 , THR A:25 , LEU A:26 , TYR A:31 , SER A:70 , ASN A:73binding site for residue OLC A 601
02AC2SOFTWAREGLU A:8 , ARG A:13 , PHE A:20 , ALA A:46 , LEU A:47 , PHE A:49 , ASN A:50binding site for residue OLC A 602
03AC3SOFTWARETRP A:121 , MET A:178 , LEU A:182 , ASN A:191 , VAL A:197 , OLC A:617binding site for residue OLC A 603
04AC4SOFTWAREARG A:190 , ASN A:191 , LEU A:195binding site for residue OLC A 604
05AC5SOFTWAREGLN A:10 , LEU A:14 , ARG A:52 , GLN A:55 , PHE A:61 , OLC A:619binding site for residue OLC A 605
06AC6SOFTWAREASN A:488 , TRP A:489 , TRP A:492 , OLC A:608 , OLC A:617binding site for residue OLC A 606
07AC7SOFTWAREARG A:11 , LEU A:18 , PHE A:65binding site for residue OLC A 607
08AC8SOFTWAREPHE A:137 , GLU A:170 , ASN A:488 , TRP A:492 , OLC A:606 , OLC A:614binding site for residue OLC A 608
09AC9SOFTWARELEU A:208 , TRP A:213 , ARG A:485binding site for residue OLC A 609
10AD1SOFTWAREPHE A:341 , PRO A:361binding site for residue OLC A 610
11AD2SOFTWARELEU A:18 , ASN A:73 , TYR A:76 , VAL A:94binding site for residue OLC A 611
12AD3SOFTWAREILE A:79 , LEU A:97 , VAL A:339 , PHE A:341 , PHE A:416 , OLC A:613 , OLC A:618binding site for residue OLC A 612
13AD4SOFTWAREPHE A:82 , PHE A:341 , TRP A:415 , OLC A:612binding site for residue OLC A 613
14AD5SOFTWARETRP A:141 , OLC A:608binding site for residue OLC A 614
15AD6SOFTWARELEU A:26 , PRO A:30 , TYR A:31 , PRO A:356binding site for residue OLC A 615
16AD7SOFTWAREVAL A:196 , VAL A:200 , ALA A:203 , LEU A:497binding site for residue OLC A 616
17AD8SOFTWAREVAL A:197 , LEU A:201 , LEU A:204 , OLC A:603 , OLC A:606binding site for residue OLC A 617
18AD9SOFTWAREPHE A:146 , VAL A:339 , PRO A:340 , OLC A:612binding site for residue OLC A 618
19AE1SOFTWARELEU A:54 , OLC A:605 , ILE B:211 , GLN B:212binding site for residue OLC A 619
20AE2SOFTWAREGLY A:258 , LYS A:259 , SER A:261 , GLY A:292binding site for residue GOL A 620
21AE3SOFTWARETRP A:141 , LEU A:143 , GOL A:622binding site for residue GOL A 621
22AE4SOFTWARETHR A:144 , PRO A:346 , LEU A:347 , GOL A:621binding site for residue GOL A 622
23AE5SOFTWAREPHE A:92binding site for residue GOL A 623
24AE6SOFTWAREARG A:9 , GLN A:10binding site for residue GOL A 624
25AE7SOFTWAREGOL A:626 , HOH A:705binding site for residue GOL A 625
26AE8SOFTWAREGOL A:625binding site for residue GOL A 626
27AE9SOFTWAREPHE A:202 , PHE A:206binding site for residue GOL A 627
28AF1SOFTWAREALA B:22 , LEU B:26 , TYR B:31 , SER B:70 , ASN B:73binding site for residue OLC B 601
29AF2SOFTWAREPRO A:86 , VAL A:89 , PHE A:92 , MET B:178 , LEU B:494 , PHE B:498binding site for residue OLC B 602
30AF3SOFTWAREILE B:7 , ARG B:13 , ALA B:46 , LEU B:47 , PHE B:49binding site for residue OLC B 603
31AF4SOFTWAREVAL B:134 , GLU B:394 , ASN B:488 , TRP B:489 , TRP B:492 , GLY B:499binding site for residue OLC B 604
32AF5SOFTWARELEU B:54 , LEU B:96 , LEU B:103binding site for residue OLC B 605
33AF6SOFTWARETYR B:210 , ILE B:211 , GLN B:212binding site for residue OLC B 606
34AF7SOFTWAREARG B:209binding site for residue OLC B 607
35AF8SOFTWAREPHE B:137 , TRP B:141 , ASN B:488 , TRP B:492binding site for residue OLC B 608
36AF9SOFTWARETRP B:141 , LEU B:143 , THR B:144binding site for residue GOL B 609
37AG1SOFTWAREGLU A:239 , GLN A:277 , GLN B:277 , PHE B:280binding site for residue GOL B 610
38AG2SOFTWAREASP B:32binding site for residue GOL B 611
39AG3SOFTWARELYS A:247 , ASN A:251 , ASN B:244binding site for residue GOL B 612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N6L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5N6L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N6L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N6L)

(-) Exons   (0, 0)

(no "Exon" information available for 5N6L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhheeeeeee.........hhhhhhhhhhhhhhhhhhhh....eee.....eeee...hhhhhhhhhhhhhhhh.eeeeeeeeeee.....eeeeeeeeeee...........eee............hhhhhhhhh...................eee..eeeeeee.hhhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhh..eeeee....eeee.....eeeee.....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n6l A   3 FASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAIAYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR 508
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502      


Chain B from PDB  Type:PROTEIN  Length:491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhheeeeeee.........hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...hhhhhhhhhhhhhhhh.eeeeeeeeeee.....eeeeeeeeeee...........eee.........................eee..eeeeeee.hhhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhh..eeeee....eeee.....eeeee.....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n6l B   3 FASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESFSRGPYIQPPLSANGIELTAAIAYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR 508
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342     ||367       377       387       397       407       417       427       437       447       457       467       477       487       497       507 
                                                                                                                                                                                                                                                                                                                                                                                   348|                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                    364
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N6L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N6L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N6L)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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        LNT_ECOLI | P23930: 5n6h 5vrg 5vrh

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