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(-) Description

Title :  APOLIPOPROTEIN N-ACYLTRANSFERASE C387S ACTIVE SITE MUTANT
 
Authors :  J. M. Murray, C. L. Noland
Date :  10 May 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A
Keywords :  Lnt C387S, Acyl Transferase, Membrane Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. L. Noland, M. Kattke, J. Diao, S. Gloor, H. Pantua, M. Reichelt, A. Katakam, D. Yan, J. Kang, I. Zilberleyb, M. Xu, S. Kapadia, J. M. Murray
Structural Insights Into Lipoprotein N-Acylation By Escherichia Coli Apolipoprotein N-Acyltransferase
Proc. Natl. Acad. Sci. Usa 2017
PubMed: search  |  Reference-DOI: 10.1073/PNAS.1707813114

(-) Compounds

Molecule 1 - APOLIPOPROTEIN N-ACYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LNT, CUTE, B0657, JW0654
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric/Biological Unit (5, 8)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MG1Ligand/IonMAGNESIUM ION
3OLB2Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4OLC2Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
5PLM2Ligand/IonPALMITIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:121 , ASN A:191 , PRO A:194 , VAL A:197 , HOH A:780binding site for residue OLB A 601
2AC2SOFTWAREGLU A:394 , THR A:486 , ASN A:488 , TRP A:489 , THR A:495 , ALA A:496 , PLM A:605 , HOH A:705binding site for residue OLB A 602
3AC3SOFTWAREGLU A:381 , ASP A:403 , HOH A:844binding site for residue MG A 603
4AC4SOFTWAREALA A:22 , TYR A:31 , ILE A:39 , SER A:70 , ASN A:73binding site for residue PLM A 604
5AC5SOFTWAREPHE A:137 , TRP A:492 , OLB A:602binding site for residue PLM A 605
6AC6SOFTWAREGLN A:233 , LYS A:236 , TRP A:237 , ASN A:412 , TRP A:415binding site for residue CL A 606
7AC7SOFTWAREILE A:79 , PHE A:82 , ASN A:314 , VAL A:339 , PHE A:341 , GLU A:343 , TRP A:415 , OLC A:608binding site for residue OLC A 607
8AC8SOFTWAREPHE A:146 , GLU A:267 , LYS A:335 , PHE A:341 , GLU A:343 , PRO A:346 , SER A:387 , TYR A:388 , ASN A:412 , TRP A:415 , PHE A:416 , OLC A:607binding site for residue OLC A 608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VRH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:29 -Pro A:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VRH)

(-) Exons   (0, 0)

(no "Exon" information available for 5VRH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhheeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eee.....eeee...hhhhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeee...........eee..........................eee..eeeeeee.hhhhhhhhhhhhh.....eeeeeehhhhhh..hhhhhhhhhhhhhhhhhh..eeeee.....eee.....eeee......eeeeeee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vrh A   4 ASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESSFSRGPYIQPPLSANGIELTAAISYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSL 507
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343    || 367       377       387       397       407       417       427       437       447       457       467       477       487       497       507
                                                                                                                                                                                                                                                                                                                                                                                  348|                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                   363
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VRH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VRH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VRH)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5VRH)

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  Cis Peptide Bonds
    Ser A:29 - Pro A:30   [ RasMol ]  
 

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  5vrh
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  2.3.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LNT_ECOLI | P23930: 5n6h 5n6l 5vrg

(-) Related Entries Specified in the PDB File

5vrg