5VP9 - JenaLib

Title :   CRYSTAL STRUCTURE OF HCV NS3/4A PROTEASE IN COMPLEX WITH AM-07, AN ANALOGUE OF 5172-MCP1P3

Authors :   A. N. Matthew, C. A. Schiffer

Date :   04 May 17 (Deposition) - 21 Jun 17 (Release) - 21 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym./Biol. Unit : A

Keywords :   Ns3/4A Protease, Hepatitis C Virus, Drug Resistance, Protease Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. N. Matthew, J. Zephyr, C. J. Hill, M. Jahangir, A. Newton, C. J. Petropoulos, W. Huang, N. Kurt Yilmaz, C. A. Schiffer, A. Ali
Hepatitis C Virus Ns3/4A Protease Inhibitors Incorporating Flexible P2 Quinoxalines Target Drug Resistant Viral Variants.
J. Med. Chem. 2017
PubMed-ID: 28594175 | Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00426

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:1041 , PHE A:1043 , TYR A:1056 , HIS A:1057 , GLY A:1058 , ASP A:1081 , ARG A:1123 , LEU A:1135 , LYS A:1136 , GLY A:1137 , SER A:1138 , SER A:1139 , PHE A:1154 , ARG A:1155 , ALA A:1156 , ALA A:1157 , ASP A:1168 , SO4 A:1202 , HOH A:1312 , HOH A:1380 , HOH A:1385	binding site for residue 9H7 A 1201
2	AC2	SOFTWARE	TYR A:1006 , GLN A:1008 , TYR A:1056 , 9H7 A:1201 , HOH A:1312 , HOH A:1353 , HOH A:1354 , HOH A:1382	binding site for residue SO4 A 1202
3	AC3	SOFTWARE	CYS A:1097 , CYS A:1099 , CYS A:1145 , HIS A:1149	binding site for residue ZN A 1203

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeehhhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeee.hhh......eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5vp9 A  983 MASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVDFIPVESLETTMR 1180
                                   992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (31, 31)

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