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(-) Description

Title :  STRUCTURE OF S. CEREVISIAE ULP2-TOF2-CSM1 COMPLEX
 
Authors :  N. Singh, K. D. Corbett
Date :  07 Mar 17  (Deposition) - 17 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Monopolin, Cohibin, Rdna Silencing, Desumoylation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liang, N. Singh, C. R. Carlson, C. P. Albuquerque, K. D. Corbett, H. Zhou
Recruitment Of A Sumo Isopeptidase To Rdna Stabilizes Silencing Complexes By Opposing Sumo Targeted Ubiquitin Ligase Activity.
Genes Dev. V. 31 802 2017
PubMed-ID: 28487408  |  Reference-DOI: 10.1101/GAD.296145.117

(-) Compounds

Molecule 1 - MONOPOLIN COMPLEX SUBUNIT CSM1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CSM1, SPO86, YCR086W, YCR86W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CHROMOSOME SEGREGATION IN MEIOSIS PROTEIN 1
 
Molecule 2 - ULP2P,TOPOISOMERASE 1-ASSOCIATED FACTOR 2 CHIMERA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VIN7_2425, TOF2, YKR010C, YK109
    Organism Common: YEAST, BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE X SACCHAROMYCES KUDRIAVZEVII, SACCHAROMYCES CEREVISIAE
    Organism Taxid: 1095631, 559292
    Strain: VIN7, ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5V3N)

(-) Sites  (0, 0)

(no "Site" information available for 5V3N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V3N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V3N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V3N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V3N)

(-) Exons   (0, 0)

(no "Exon" information available for 5V3N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeeeeeee....eeeeeeeee......eeeeeeeeeee.hhh.eeeeeee.....hhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5v3n A  70 NSEVIKDLYEYLCNVRVHKSYEDDSGLWFDISQGTHSSDDYSIMDYKLGFVKGQAQVTEVIYAPVLKQRSTEELYSLQSKLPEYLFETLSFPLSSLNQFYNKIAKSLNK 181
                                    79        89        99     ||112       122       132       142       152       162       172         
                                                             105|                                                                        
                                                              109                                                                        


Chain B from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhh..hhhhhhhh.........ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 5v3n B  25 NAPYFGRPSLKTRAKQFEGVSSKNCRRIEAFSD  61
                                    34        44  ||    58   
                                                 47|         
                                                  52
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V3N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V3N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V3N)

(-) Gene Ontology  (33, 39)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSM1_YEAST | P25651: 3n4r 3n4s 3n4x 3n7n 5ktb 5v1a
        TOF2_YEAST | Q02208: 5hoi

(-) Related Entries Specified in the PDB File

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