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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF YEAST CTF4 BOUND TO TOF2.
 
Authors :  A. C. Simon, L. Pellegrini
Date :  19 Jan 16  (Deposition) - 22 Jun 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Dna Replication, Adaptor Protein, Beta-Propeller Domain, Replication (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Villa, A. C. Simon, M. A. Ortiz Bazan, M. L. Kilkenny, D. Wirthensohn, M. Wightman, D. Matak-Vinkovic, L. Pellegrini, K. Labib
Ctf4 Is A Hub In The Eukaryotic Replisome That Links Multiple Cip-Box Proteins To The Cmg Helicase.
Mol. Cell V. 63 385 2016
PubMed-ID: 27397685  |  Reference-DOI: 10.1016/J.MOLCEL.2016.06.009
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA POLYMERASE ALPHA-BINDING PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 472-927
    Gene: CTF4, CHL15, POB1, YPR135W, P9659.7
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CHROMOSOME REPLICATION PROTEIN CHL15,CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4,PROTEIN POB1
 
Molecule 2 - TOPOISOMERASE 1-ASSOCIATED FACTOR 2
    Chains: D, E, F
    Engineered: YES
    Fragment: UNP RESIDUES 497-517
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: THE SYNTHETIC PEPTIDE CORRESPONDS TO AMINO ACIDS 497 TO 517 OF YEAST TOF2.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HOI)

(-) Sites  (0, 0)

(no "Site" information available for 5HOI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HOI)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Phe A:766 -Pro A:767
2Phe B:766 -Pro B:767
3Phe C:766 -Pro C:767

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HOI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HOI)

(-) Exons   (0, 0)

(no "Exon" information available for 5HOI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee...eeeeeeee..eeeeeeee........eeeee.....eeee...eeeee.....eeeeee.......eeee........eeeeee....eeeee...eeeee.....eeeeee...eeeeeee..eeeeeee.....eeeeeeee....eeeeeeeee.........hhhhhhhh.....eeee.....eeee....eeeeee...hhhhheeeeeeehhhhhhhhh.......eeeeeeeee..eeeeeeee.............eeee......hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hoi A 474 FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK 927
                                   483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663|      680       690       700       710       720       730       740       750       760       770       780       790||     822       832       842       852       862       872       882       892       902       912       922     
                                                                                                                                                                                                                       663|                                                                                                                     791|                                                                                                                 
                                                                                                                                                                                                                        671                                                                                                                      814                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:432
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeeeee...eeeeeeee..eeeeeeee........eeeee.....eeee...eeeee.....eeeeee.......eeee........eeeeee...eeeeee...eeeeee....eeeeee...eeeeeee..eeeeeee.....eeeeeeee....eeeeeeeee.........hhhhh..hhhhhhhh.....eeee.....eeee....eeeeee...hhhhheeeeeeehhhhhhhhh.......eeeeeeeee..eeeeeeee.............eeee......hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hoi B 474 FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK 927
                                   483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       815       825       835       845       855       865       875       885       895       905       915       925  
                                                                                                                                                                                                                                                                                                                                                       791|                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                        814                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee...eeeeeee....eeeeeee........eeeee.....eeee...eeeee.....eeeeee.......eeee........eeeeee....eeeee...eeeee.....eeeeee...eeeeeee..eeeeeeee...eeeeeeee......eeeeeeee.........hhhhhhhh.....eeee.....eeee....eeeeee........eeeeeeehhhhhhhhh.......eeeeeeeee..eeeeeeee.............eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hoi C 474 FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEI 776
                                   483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663|      680       690       700       710       720       730       740       750       760       770      
                                                                                                                                                                                                                       663|                                                                                                         
                                                                                                                                                                                                                        671                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5hoi D 502 VKIQETIRKLNR 513
                                   511  


Chain E from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5hoi E 502 VKIQETIRKLNR 513
                                   511  


Chain F from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author .hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5hoi F 504 IQETIRKL 511
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HOI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HOI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HOI)

(-) Gene Ontology  (24, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:766 - Pro A:767   [ RasMol ]  
    Phe B:766 - Pro B:767   [ RasMol ]  
    Phe C:766 - Pro C:767   [ RasMol ]  
 

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  CTF4_YEAST | Q01454
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CTF4_YEAST | Q01454: 4c8h 4c8s 4c93 4c95 5hog
        TOF2_YEAST | Q02208: 5v3n

(-) Related Entries Specified in the PDB File

4c8h CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF YEAST CTF4, SELENOMETHIONINE PROTEIN.
4c8s CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF YEAST CTF4.
4c93 CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF YEAST CTF4 BOUND TO POL ALPHA.
4c95 CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF YEAST CTF4 BOUND TO SLD5.