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(-) Description

Title :  CRYSTAL STRUCTURE OF ZIKA VIRUS NS2B-NS3 PROTEASE IN APO-FORM.
 
Authors :  S. Nocadello, S. H. Light, G. Minasov, L. Shuvalova, A. A. Cardona-Corr I. Ojeda, J. Vargas, M. E. Johnson, H. Lee, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  22 Aug 16  (Deposition) - 07 Sep 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Peptidase S7, Flavivirus Ns3 Serine Protease. , Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Nocadello, S. H. Light, G. Minasov, L. A. Shuvalova, A. A. Cardona-Correa, I. Ojeda, J. Vargas, M. E. Johnson, H. Lee, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases
Crystal Structure Of Zika Virus Ns2B-Ns3 Protease In Apo-Form.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NS2B-NS3 PROTEASE,NS2B-NS3 PROTEASE
    Chains: A, B
    EC Number: 3.4.21.91, 3.6.1.15, 3.6.4.13, 2.1.1.56, 2.1.1.57, 2.7.7.48, 3.4.21.91, 3.6.1.15, 3.6.4.13, 2.1.1.56, 2.1.1.57, 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-15B
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: ZIKV
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320
    Strain: MR 766

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5T1V)

(-) Sites  (0, 0)

(no "Site" information available for 5T1V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T1V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T1V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5T1V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee............eeeeeeeee..eeeeeeeeeee..eeeehhhhhh...eee..eee.eeeee....eeee...............eee............ee..eee......eee.....hhhhh..eee.....eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t1v A   6 VDMYIERAGDITWEKDAETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIK 222
                                    15      ||84        94       104       114       124       134       144       154       164       174       184       194       204       214        
                                           22|                                                                                                                                            
                                            82                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee........ee........eeeeeeeee..eeeeeeeeeee..eeeehhhhhh...eee..eee.eeeee....eeee...............eee...........eee..ee.....eee.....hhhhh..eee.....eeee....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t1v B   6 VDMYIERAGDITWEKDAEVTGKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKN 223
                                    15        25||      88        98       108       118       128       138       148       158       168       178   ||  190       200       210       220   
                                               26|                                                                                                   182|                                      
                                                80                                                                                                    185
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T1V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T1V)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (58, 58)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        POLG_ZIKV | Q32ZE1: 5gj4 5gpi 5jps 5jrz 5k6k 5tfr 5tmh 5u04 5u0b 5u0c

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