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(-) Description

Title :  CRYSTAL STRUCTURE OF ZIKA VIRUS NS5 RNA-DEPENDENT RNA POLYMERASE
 
Authors :  A. S. Godoy, G. M. A. Lima, K. I. Z. Oliveira, N. U. Torres, F. V. Maluf, R. V G. Oliva
Date :  22 Nov 16  (Deposition) - 22 Feb 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Ns5, Zika, Virus, Rna, Polymerase, Drug, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Godoy, G. M. Lima, K. I. Oliveira, N. U. Torres, F. V. Maluf, R. V. Guido, G. Oliva
Crystal Structure Of Zika Virus Ns5 Rna-Dependent Rna Polymerase.
Nat Commun V. 8 14764 2017
PubMed-ID: 28345596  |  Reference-DOI: 10.1038/NCOMMS14764

(-) Compounds

Molecule 1 - ZIKA VIRUS NS5 RDRP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: ZIKV
    Organism Scientific: ZIKA VIRUS (STRAIN MR 766)
    Organism Taxid: 64320
    Strain: MR 766

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
2ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:714 , CYS A:730 , CYS A:849 , HOH A:1113binding site for residue ZN A 1001
2AC2SOFTWAREGLU A:439 , HIS A:443 , CYS A:448 , CYS A:451binding site for residue ZN A 1002
3AC3SOFTWAREARG A:731 , ARG A:739 , THR A:796 , TRP A:797 , HOH A:1356binding site for residue PO4 A 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5U04)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5U04)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5U04)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5U04)

(-) Exons   (0, 0)

(no "Exon" information available for 5U04)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh......hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhhhhhhh.eeee..eeee...hhhhhhhhhhhhhh............hhhhh.....eeeeee.....eeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........................hhhhhhhhhhh.............hhhhh...hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5u04 A 321 LVNGVVRLLSKPWDVVTGVTVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAEKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYARISKFDLENEALITNQMEEGHRTLALAVIKYTYQNVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVTRWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLS 887
                                   330       340|      373       383       393       403    || 421       431       441       451  ||   477       487       497       507       517       527     ||545       555       565       575||     614       624       634       644       654       664       674       684    || 699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879        
                                             340|                                         408|                                  454|                                                           533|                               576|                                                                                689|                                                                                                                                                                                                
                                              364                                          417                                   471                                                            542                                606                                                                                 695
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5U04)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5U04)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5U04)

(-) Gene Ontology  (58, 102)

Asymmetric/Biological Unit(hide GO term definitions)

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  5u04
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  POLG_ZIKV | Q32ZE1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_ZIKV | Q32ZE1: 5gj4 5gpi 5jps 5jrz 5k6k 5t1v 5tfr 5tmh 5u0b 5u0c

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5U04)