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(-) Description

Title :  STRUCTURE OF THE ZIKA VIRUS NS3 HELICASE DOMAIN
 
Authors :  Z. Jia, J. Wang
Date :  04 May 16  (Deposition) - 17 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A
Keywords :  Zika Virus, Ns3 Helicase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Jia, J. Wang
Structure Of The Zika Virus Ns3 Helicase Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NS3 HELICASE
    Chains: A
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1674-2115
    Organism Common: ZIKV
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320
    Strain: MR 766

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JPS)

(-) Sites  (0, 0)

(no "Site" information available for 5JPS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JPS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:193 -Leu A:194
2Gly A:444 -Pro A:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JPS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JPS)

(-) Exons   (0, 0)

(no "Exon" information available for 5JPS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh...eeee.....hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh....eee.......eeeeehhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhhh...eeeee.................eeeee...........hhhhhh....eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeee.hhhhh.......eeee..eeeeeeee...eeeeeeeee.hhhhhhhhhh..........eeeee..........hhhhhhhhhhhh............hhhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhh......hhhhh..hhhhh.ee..ee.eee.....eee.....ee.hhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jps A 176 VECFEPSMLKKKQLTVLDLKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR 617
                                   185       200       210       220       230       240    || 257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617
                                            194|                                          245|                                                                                                                                                                                                                                                                                                                                                                            
                                             200                                           253
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JPS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JPS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JPS)

(-) Gene Ontology  (58, 58)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:193 - Leu A:194   [ RasMol ]  
    Gly A:444 - Pro A:445   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_ZIKV | Q32ZE1: 5gj4 5gpi 5jrz 5k6k 5t1v 5tfr 5tmh 5u04 5u0b 5u0c

(-) Related Entries Specified in the PDB File

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