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(-) Description

Title :  CRYSTAL STRUCTURE OF THE H253D MUTANT OF MCOG FROM ASPERGILLUS NIGER
 
Authors :  M. Ferraroni, F. Briganti, J. A. Tamayo-Ramos, W. J. H. Van Berkel, A. H
Date :  19 Sep 16  (Deposition) - 03 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, A. H. Westphal, M. Borsari, J. A. Tamayo-Ramos, F. Briganti, L. H. De Graaff, W. J. H. Van Berkel
Structure And Function Of Aspergillus Niger Laccase Mcog
Biocatalysis 2017
PubMed: search  |  Reference-DOI: 10.1515/BOCA-2017-0001

(-) Compounds

Molecule 1 - MULTICOPPER OXIDASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PALIV
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AN08G08450
    Mutation: YES
    Organism Scientific: ASPERGILLUS NIGER (STRAIN CBS 513.88 / FGSC A1513)
    Organism Taxid: 425011

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 18)

Asymmetric/Biological Unit (5, 18)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CU4Ligand/IonCOPPER (II) ION
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PER1Ligand/IonPEROXIDE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:110 , HIS A:152 , HIS A:517 , PER A:618binding site for residue CU A 601
02AC2SOFTWAREHIS A:154 , HIS A:451 , HIS A:453 , HIS A:515 , PER A:618binding site for residue CU A 602
03AC3SOFTWAREHIS A:108 , HIS A:451 , HIS A:453 , PER A:618 , HOH A:897binding site for residue CU A 603
04AC4SOFTWAREHIS A:448 , CYS A:516 , ILE A:518 , HIS A:521 , PHE A:526binding site for residue CU A 604
05AC5SOFTWAREASN A:60 , MET A:100 , GLU A:101 , ASN A:102 , ASN A:103 , NAG A:607 , NAG A:609 , HOH A:926 , HOH A:946 , HOH A:978binding site for residue NAG A 605
06AC6SOFTWAREGLU A:196 , NAG A:610 , MAN A:613 , MAN A:617 , HOH A:779 , HOH A:832 , HOH A:852binding site for residue BMA A 606
07AC7SOFTWAREASN A:102 , TYR A:562 , NAG A:605 , HOH A:848 , HOH A:851 , HOH A:881 , HOH A:1013 , HOH A:1150binding site for residue NAG A 607
08AC8SOFTWAREASN A:400 , ARG A:567 , TYR A:573 , NAG A:615 , HOH A:769 , HOH A:808 , HOH A:845 , HOH A:1128binding site for residue NAG A 608
09AC9SOFTWAREGLN A:199 , ALA A:570 , BMA A:606 , HOH A:849 , HOH A:1079binding site for residue MAN A 613
10AD1SOFTWAREASN A:134binding site for residue NAG A 614
11AD2SOFTWARENAG A:608 , HOH A:743 , HOH A:1128binding site for residue NAG A 615
12AD3SOFTWARENAG A:612binding site for residue BMA A 616
13AD4SOFTWAREBMA A:606 , HOH A:762binding site for residue MAN A 617
14AD5SOFTWAREHIS A:108 , HIS A:110 , HIS A:152 , HIS A:154 , HIS A:451 , HIS A:453 , HIS A:515 , HIS A:517 , CU A:601 , CU A:602 , CU A:603binding site for residue PER A 618
15AD6SOFTWAREPRO A:82 , THR A:83 , LEU A:168 , LEU A:181 , GLY A:182 , MET A:183 , ASN A:216 , BMA A:616 , HOH A:726 , HOH A:729 , HOH A:742 , HOH A:863 , HOH A:893 , HOH A:904 , HOH A:937 , HOH A:968 , HOH A:977binding site for Poly-Saccharide residues NAG A 611 through NAG A 612 bound to ASN A 216
16AD7SOFTWAREASN A:102 , ASN A:103 , SER A:156 , THR A:193 , ASP A:195 , GLU A:196 , TRP A:403 , TYR A:562 , GLU A:574 , NAG A:605 , BMA A:606 , HOH A:718 , HOH A:741 , HOH A:878 , HOH A:907 , HOH A:973 , HOH A:976 , HOH A:982 , HOH A:1013 , HOH A:1035 , HOH A:1099 , HOH A:1102binding site for Poly-Saccharide residues NAG A 609 through NAG A 610

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:129 -A:550
2A:314 -A:351

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:79 -Pro A:80
2Val A:387 -Pro A:388

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LWX)

(-) Exons   (0, 0)

(no "Exon" information available for 5LWX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:554
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeeeeeeeeeeee......eeeeee.....eeeeeee...eeeeeeee........eeee......hhhhh..............eeeeeee....eeeeeee...hhhhhh.eeeeeee........eeeeeeeeeee...hhhhhhhhhhh........eeee....eee.....eee...eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee.............eeeeee...........................................eeeeeeeeeeee....eeeeee...........hhhhhhhhh......hhhh.eeee.....eeeeeeee.....eeeee....eeeeeeee................ee.eeee...hhhhh..eeeeeeee....eeeeeee.hhhhhhh..eeeeee.hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lwx A  24 SSQSPNTPWQGYDINTNYYETIPQTNVVREYWFDIVNTTAALDGVERPVLLVNGQFPGPTIEANWGDTVKVHVTNRMENNGTAIHFHGIRQLYNNQMDGVAALTQCPVPPNSSYTYVWRAEEYGSSWYHSHFSLQAWEGVFGGILIHGPSTAEYDHDLGMVFLNDWSHQTVDEMYQSVLESQNPPHFQTGLINGSNIWVTADNQTVGRRFQTEFVPGQRYRLRLVNAAMDTHFRFSIDNHDLTVIASDFVPIVPFTTNNVPIGMGQRYDIIVTANQAPDNYWIRAIPQSFCSDNANSDNIKGVLHYEGAADNSDPTSTKWDYGDDIQCLDFSLDELVPWLALDADIGGAQMAESDVDFTPFGDVPLYLWTMGGNALNISWKDPTLQQTFEDPDKMDWKASQGVIEAAIPNKWTVLVVQTDLPVPHPIHLHGHDFYLLAQGFGQFNPQNVTLKTHNPPRRDTALMTAATPENGGGGYMVIGFPADNPGVWLIHCHIGFHATEGFAQQIVERQSEFNTFFSEDLLENTCDAWDEYAKVNPYGHQYRALAGPYESGI 577
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LWX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LWX)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:79 - Pro A:80   [ RasMol ]  
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        A2QS62_ASPNC | A2QS62: 5lm8 5lww

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