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(-) Description

Title :  CRYSTAL STRUCTURE OF A LACCASE-LIKE MULTICOPPER OXIDASE MCOG FROM ASPERGILLUS NIGER BOUND TO ZINC
 
Authors :  M. Ferraroni, F. Briganti, J. A. Tamayo-Ramos, W. J. H. Van Berkel, A. H
Date :  19 Sep 16  (Deposition) - 03 May 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, A. H. Westphal, M. Borsari, J. A. Tamayo-Ramos, F. Briganti, L. H. De Graaff, W. J. H. Van Berkel
Structure And Function Of Aspergillus Niger Laccase Mcog
Biocatalysis 2017
PubMed: search  |  Reference-DOI: 10.1515/BOCA-2017-0001

(-) Compounds

Molecule 1 - MULTICOPPER OXIDASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PALIV
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AN08G08450
    Mutation: YES
    Organism Scientific: ASPERGILLUS NIGER (STRAIN CBS 513.88 / FGSC A1513)
    Organism Taxid: 425011

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 27)

Asymmetric/Biological Unit (9, 27)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BMA2Ligand/IonBETA-D-MANNOSE
3CL1Ligand/IonCHLORIDE ION
4CU4Ligand/IonCOPPER (II) ION
5GOL1Ligand/IonGLYCEROL
6K1Ligand/IonPOTASSIUM ION
7MAN2Ligand/IonALPHA-D-MANNOSE
8NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
9ZN8Ligand/IonZINC ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:400 , ARG A:567 , LEU A:569 , TYR A:573binding site for residue NAG A 605
02AC2SOFTWAREASN A:103 , SER A:156 , ASP A:195 , TRP A:403 , GLU A:574 , NAG A:601 , NAG A:604 , HOH A:723 , HOH A:810 , HOH A:848binding site for residue NAG A 606
03AC3SOFTWAREALA A:570 , BMA A:603 , HOH A:711 , HOH A:856binding site for residue MAN A 611
04AC4SOFTWAREHIS A:110 , HIS A:152 , HIS A:517 , HOH A:870binding site for residue CU A 612
05AC5SOFTWAREHIS A:154 , HIS A:451 , HIS A:453 , HIS A:515 , HOH A:870binding site for residue CU A 613
06AC6SOFTWAREHIS A:108 , HIS A:110 , HIS A:451 , HIS A:453 , HOH A:831binding site for residue CU A 614
07AC7SOFTWAREHIS A:448 , CYS A:516 , ILE A:518 , HIS A:521 , PHE A:526binding site for residue CU A 615
08AC8SOFTWAREHIS A:253 , HIS A:521 , CL A:625 , HOH A:884binding site for residue ZN A 616
09AC9SOFTWAREASP A:366 , HIS A:477 , HOH A:715 , HOH A:904binding site for residue ZN A 617
10AD1SOFTWAREHIS A:209 , ASP A:316 , ASP A:368binding site for residue ZN A 618
11AD2SOFTWAREHIS A:170 , HOH A:886 , HOH A:911binding site for residue ZN A 619
12AD3SOFTWAREHIS A:328 , ALA A:332 , ASP A:334 , HOH A:801binding site for residue ZN A 620
13AD4SOFTWAREASP A:414 , ASP A:416binding site for residue ZN A 621
14AD5SOFTWAREGLU A:555 , ACT A:626binding site for residue ZN A 622
15AD6SOFTWAREGLU A:330binding site for residue ZN A 623
16AD7SOFTWAREASP A:551 , ASP A:554 , HOH A:798 , HOH A:873binding site for residue K A 624
17AD8SOFTWAREZN A:616binding site for residue CL A 625
18AD9SOFTWAREASP A:551 , ASP A:554 , GLU A:555 , ZN A:622binding site for residue ACT A 626
19AE1SOFTWAREHIS A:564 , TYR A:566 , HOH A:773binding site for residue GOL A 627
20AE2SOFTWAREASN A:60 , LEU A:73 , MET A:100 , GLU A:101 , ASN A:102 , ASN A:103 , TYR A:562 , NAG A:606 , HOH A:724 , HOH A:850binding site for Poly-Saccharide residues NAG A 601 through NAG A 602 bound to ASN A 60
21AE3SOFTWARETHR A:83 , GLU A:85 , LEU A:168 , LEU A:181 , MET A:183 , VAL A:184 , ASN A:216 , ARG A:231 , PHE A:233 , HOH A:726 , HOH A:737 , HOH A:740 , HOH A:842 , HOH A:855 , HOH A:861binding site for Poly-Saccharide residues NAG A 607 through MAN A 610 bound to ASN A 216
22AE4SOFTWARETHR A:193 , ASP A:195 , GLU A:196 , PRO A:572 , NAG A:606 , MAN A:611 , HOH A:782binding site for Poly-Saccharide residues BMA A 603 through NAG A 604

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:129 -A:550
2A:314 -A:351

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LWW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LWW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LWW)

(-) Exons   (0, 0)

(no "Exon" information available for 5LWW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:550
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eeeeeeeeeeeee......eeeeee.....eeeeeee...eeeeeeee........eee.......hhhhh..............eeeeeee....eeeeeee...hhhhhh.eeeeeee........eeeeeeeeeee...hhhhhhhhhhh........eeee....eee.....eee..eeeee....eeeeeeee......eeeee....eeeeee.......eee.eeee....eeeeeee......eeeeeeee........hhhh.eeeeee.........................hhhhh.............eeeeeeeeeeee....eeeeee...........hhhhhhhhh...........eeee.....eeeeeeee.....eeeee....eeeeeeee................ee.eeee...hhhhh..eeeeeeee....eeeeeee.hhhhhhh..eeeeee.hhhhhhh.hhhhhhhhhhhhhhhhh.hhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lww A  28 PNTPWQGYDINTNYYETIPQTNVVREYWFDIVNTTAALDGVERPVLLVNGQFPGPTIEANWGDTVKVHVTNRMENNGTAIHFHGIRQLYNNQMDGVAALTQCPVPPNSSYTYVWRAEEYGSSWYHSHFSLQAWEGVFGGILIHGPSTAEYDHDLGMVFLNDWSHQTVDEMYQSVLESQNPPHFQTGLINGSNIWVTADNQTVGRRFQTEFVPGQRYRLRLVNAAMHTHFRFSIDNHDLTVIASDFVPIVPFTTNNVPIGMGQRYDIIVTANQAPDNYWIRAIPQSFCSDNANSDNIKGVLHYEGAADNSDPTSTKWDYGDDIQCLDFSLDELVPWLALDADIGGAQMAESDVDFTPFGDVPLYLWTMGGNALNISWKDPTLQQTFEDPDKMDWKASQGVIEAAIPNKWTVLVVQTDLPVPHPIHLHGHDFYLLAQGFGQFNPQNVTLKTHNPPRRDTALMTAATPENGGGGYMVIGFPADNPGVWLIHCHIGFHATEGFAQQIVERQSEFNTFFSEDLLENTCDAWDEYAKVNPYGHQYRALAGPYESGI 577
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LWW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LWW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LWW)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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