5LN2 - JenaLib

Title :   DISCOVERY OF A NOVEL CLASS OF HIGHLY POTENT INHIBITORS OF THE P53-MDM2 INTERACTION BY STRUCTURE-BASED DESIGN STARTING FROM A CONFORMATIONAL ARGUMENT

Authors :   J. Kallen

Date :   02 Aug 16 (Deposition) - 07 Sep 16 (Release) - 21 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.58

Chains :   Asym./Biol. Unit : A

Keywords :   Ppi With P53, Inhibitor Complex, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Furet, K. Masuya, J. Kallen, T. Stachyra-Valat, S. Ruetz, V. Guagnano, P. Holzer, R. Mah, S. Stutz, A. Vaupel, P. Chene, S. Jeay, A. Schlapbach
Discovery Of A Novel Class Of Highly Potent Inhibitors Of The P53-Mdm2 Interaction By Structure-Based Design Starting From A Conformational Argument.
Bioorg. Med. Chem. Lett. V. 26 4837 2016
PubMed-ID: 27542305 | Reference-DOI: 10.1016/J.BMCL.2016.08.010

Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE MDM2
	Chains	:	A
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN, P53 BINDING DOMAIN
	Gene	:	MDM2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING PROTEIN MDM2

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:54 , GLY A:58 , TYR A:67 , GLN A:72 , VAL A:93 , HIS A:96 , ILE A:99 , TYR A:100 , HOH A:348 , HOH A:361	binding site for residue 6ZT A 201
2	AC2	SOFTWARE	SER A:17 , GLN A:18 , ILE A:19 , HIS A:96 , HOH A:303 , HOH A:308 , HOH A:312 , HOH A:336 , HOH A:353	binding site for residue SO4 A 202
3	AC3	SOFTWARE	LYS A:64 , ASP A:80 , LEU A:81 , HOH A:351	binding site for residue CL A 203

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.eeeehhhhhhhhh........eehhhhhhhhhhhhhhh.........eee...hhhhhhhh..eee..hhhhhhhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5ln2 A  17 SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVN 111
                                    26        36        46        56        66        76        86        96       106

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (83, 83)

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	5ln2
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Description