4HG7 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN MDM2/NUTLIN-3A COMPLEX

Authors :   M. E. M. Noble, B. Anil, C. Riedinger, J. A. Endicott

Date :   07 Oct 12 (Deposition) - 31 Jul 13 (Release) - 21 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Mdm2, Nutlin-3A, Surface Entropy Reduction, Mutant Validation, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Anil, C. Riedinger, J. A. Endicott, M. E. Noble
The Structure Of An Mdm2-Nutlin-3A Complex Solved By The Us Of A Validated Mdm2 Surface-Entropy Reduction Mutant.
Acta Crystallogr. , Sect. D V. 69 1358 2013
PubMed-ID: 23897459 | Reference-DOI: 10.1107/S0907444913004459

Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE MDM2
	Chains	:	A
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX6P1
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	P53 BINDING DOMAIN (RESIDUES 17-125)
	Gene	:	MDM2
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DOUBLE MINUTE 2 PROTEIN, HDM2, ONCOPROTEIN MDM2, P53-BINDING PROTEIN MDM2

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	NUT	1	Ligand/Ion	4-({(4S,5R)-4,5-BIS(4-CHLOROPHENYL)-2-[4-METHOXY-2-(PROPAN-2-YLOXY)PHENYL]-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}CARBONYL)PIPERAZIN-2-ONE
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	NUT	1	Ligand/Ion	4-({(4S,5R)-4,5-BIS(4-CHLOROPHENYL)-2-[4-METHOXY-2-(PROPAN-2-YLOXY)PHENYL]-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}CARBONYL)PIPERAZIN-2-ONE
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	NUT	2	Ligand/Ion	4-({(4S,5R)-4,5-BIS(4-CHLOROPHENYL)-2-[4-METHOXY-2-(PROPAN-2-YLOXY)PHENYL]-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}CARBONYL)PIPERAZIN-2-ONE
2	SO4	2	Ligand/Ion	SULFATE ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:32 , LEU A:54 , LEU A:57 , GLY A:58 , ILE A:61 , MET A:62 , GLN A:72 , HIS A:73 , VAL A:93 , HIS A:96 , SO4 A:202 , HOH A:307 , HOH A:327 , HOH A:338	BINDING SITE FOR RESIDUE NUT A 201
2	AC2	SOFTWARE	LYS A:31 , GLN A:71 , GLN A:72 , HIS A:73 , NUT A:201 , HOH A:320 , HOH A:324 , HOH A:331 , HOH A:347	BINDING SITE FOR RESIDUE SO4 A 202

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains d4hg7a_ A: MDM2                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.ee..hhhhhhhhhhh......eehhhhhhhhhhhhhhh.........eee...hhhhhhhh..eee..hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4hg7 A  18 QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDAAQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLV 108
                                    27        37        47        57        67        77        87        97       107

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (83, 83)

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