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(-) Description

Title :  EBOV GP IN COMPLEX WITH VARIABLE FAB DOMAINS OF IGGS C4G7 AND C13C6
 
Authors :  J. Pallesen, C. D. Murin, N. De Val, C. A. Cottrell, K. M. Hastie, H. L. Tu M. L. Fusco, A. I. Flyak, L. Zeitlin, J. E. Crowe Jr. , K. G. Andersen, E. O. Saphire, A. B. Ward
Date :  09 Jun 16  (Deposition) - 07 Sep 16  (Release) - 07 Sep 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,M,N,O,P,Q
Keywords :  Ebola Virus Surface Glycoprotein, Therapeutic Antibody Cocktail, Zmapp, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Pallesen, C. D. Murin, N. De Val, C. A. Cottrell, K. M. Hastie, H. L. Turner, M. L. Fusco, A. I. Flyak, L. Zeitlin, J. E. Crowe, K. G. Andersen, E. O. Saphire, A. B. Ward
Structures Of Ebola Virus Gp And Sgp In Complex With Therapeutic Antibodies.
Nat Microbiol V. 1 16128 2016
PubMed-ID: 27562261  |  Reference-DOI: 10.1038/NMICROBIOL.2016.128

(-) Compounds

Molecule 1 - EBOLA SURFACE GLYCOPROTEIN, GP1
    Chains: A, E, K
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Common: FRUIT FLY
    Expression System Taxid: 7227
    Gene: GP
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS
    Organism Taxid: 128952
    Strain: MAYINGA-76
 
Molecule 2 - EBOLA SURFACE GLYCOPROTEIN, GP2
    Chains: B, F, M
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Common: FRUIT FLY
    Expression System Taxid: 7227
    Gene: GP
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76)
    Organism Taxid: 128952
    Strain: MAYINGA-76
 
Molecule 3 - C4G7 VARIABLE FAB DOMAIN HEAVY CHAIN
    Chains: C, G, N
    Engineered: YES
    Expression System: NICOTIANA BENTHAMIANA
    Expression System Taxid: 4100
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - C4G7 VARIABLE FAB DOMAIN LIGHT CHAIN
    Chains: D, H, O
    Engineered: YES
    Expression System: NICOTIANA BENTHAMIANA
    Expression System Taxid: 4100
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 5 - C13C6 VARIABLE FAB DOMAIN LIGHT CHAIN
    Chains: I, P
    Engineered: YES
    Expression System: NICOTIANA BENTHAMIANA
    Expression System Taxid: 4100
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 6 - C13C6 VARIABLE FAB DOMAIN HEAVY CHAIN
    Chains: J, Q
    Engineered: YES
    Expression System: NICOTIANA BENTHAMIANA
    Expression System Taxid: 4100
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : ABCDEFGHIJKMNOPQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG15Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN E:238 , ASP J:56binding site for residue NAG E 401
2AC2SOFTWAREASN K:238binding site for residue NAG K 407
3AC3SOFTWARELEU E:254 , ASN E:257binding site for Poly-Saccharide residues NAG E 402 through NAG E 403 bound to ASN E 257
4AC4SOFTWARELYS A:155 , GLU A:156 , PRO B:509 , ASN B:563 , TRP F:531 , PHE F:535binding site for Poly-Saccharide residues NAG A 401 through MAN A 405
5AC5SOFTWARELYS A:155 , GLU A:156 , NAG A:401 , GLU E:156 , GLN F:508 , PRO F:509 , PHE F:535 , ASN F:563 , THR F:566 , TRP M:531binding site for Poly-Saccharide residues NAG F 701 through MAN F 705
6AC6SOFTWAREGLU E:156 , GLN F:508 , NAG F:701 , LYS K:155 , GLU K:156 , ALA K:158 , GLN M:508 , PRO M:509 , ASN M:563 , THR M:566binding site for Poly-Saccharide residues NAG K 401 through MAN K 405
7AC7SOFTWARELYS K:155 , GLU K:156 , THR K:227 , ASN K:228 , THR K:230 , GLU K:231 , NAG K:401 , GLN M:508binding site for Poly-Saccharide residues GLU K 229 through NAG K 406
8AC8SOFTWAREASN K:268binding site for Poly-Saccharide residues NAG K 408 through NAG K 409
9AC9SOFTWAREASN K:257binding site for Poly-Saccharide residues NAG K 410 through NAG K 411

(-) SS Bonds  (25, 25)

Asymmetric/Biological Unit
No.Residues
1A:53 -B:609
2A:108 -A:135
3A:121 -A:147
4B:511 -B:556
5B:601 -B:608
6C:22 -C:92
7D:23 -D:88
8E:53 -F:609
9E:108 -E:135
10E:121 -E:147
11F:511 -F:556
12F:601 -F:608
13G:22 -G:92
14H:23 -H:88
15I:23 -I:88
16J:22 -J:92
17K:53 -M:609
18K:108 -K:135
19K:121 -K:147
20M:511 -M:556
21M:601 -M:608
22N:22 -N:92
23O:23 -O:88
24P:23 -P:88
25Q:22 -Q:92

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Ser D:7 -Pro D:8
2Thr D:94 -Pro D:95
3Ser H:7 -Pro H:8
4Thr H:94 -Pro H:95
5Ser I:7 -Pro I:8
6Tyr I:94 -Pro I:95
7Ser O:7 -Pro O:8
8Thr O:94 -Pro O:95
9Ser P:7 -Pro P:8
10Tyr P:94 -Pro P:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KEN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KEN)

(-) Exons   (0, 0)

(no "Exon" information available for 5KEN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.............hhh.ee.eeee.hhhh...hhhhhhhh..........eee.eeee.eeeeeee.......................eeeeeeeeee..............eeee..eee..........eeee..ee...hhhhhh...eeeee.......eeeeee..ee........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ken A   33 IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETI  260
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182    || 213       223       233       243       253       
                                                                                                                                                                                    187|                                                   
                                                                                                                                                                                     209                                                   


Chain B from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee.......hhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5ken B  503 AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW  615
                                   512       522       532       542       552       562       572       582       592       602       612   


Chain C from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eee.....eeeeeee.hhhhhhh..eeeeee.....eeeeee......eee........eeeeehhh.eeeeee...hhhh.eeee..................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                5ken C    1 EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    || 104        
                                                                              52A                            82A||               100A|            
                                                                                                              82B|                100B            
                                                                                                               82C                                


Chain D from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                5ken D    1 DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK  107
                                    10        20        30        40        50        60        70        80        90       100       


Chain E from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.............hhh.ee..eee.hhhh...hhhhhhhh..........eee...ee.eeeeeee.......................eeeeeeeeee..............eeee..eee..........eeee..ee...hhhhhh...eeeee.......eeeeee..eee.......hhhhhhhhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ken E   33 IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNRKIRSEELSF  308
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182    || 213       223       233       243       253       263       273    || 303     
                                                                                                                                                                                    187|                                                                  278|         
                                                                                                                                                                                     209                                                                   299         


Chain F from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.......hhhhhh.....hhhhhheeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5ken F  503 AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW  615
                                   512       522       532       542       552       562       572       582       592       602       612   


Chain G from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eee.....eeeeeee.hhhhhhh..eeeeee.....eeeeee......eee........eeeeehhh.eeeeee...hhhh.eeee..................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                5ken G    1 EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    || 104        
                                                                              52A                            82A||               100A|            
                                                                                                              82B|                100B            
                                                                                                               82C                                


Chain H from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                5ken H    1 DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK  107
                                    10        20        30        40        50        60        70        80        90       100       


Chain I from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                5ken I    1 DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR  107
                                    10        20        30        40        50        60        70        80        90       100       


Chain J from PDB  Type:PROTEIN  Length:121
                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......eeeeeeeee..........eeeeeeehhhh..eeeeeee...eeeehhhhhh.eeeeeehhh.eeeeeeeeehhhhheeeeeee...........ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                5ken J    1 DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS  112
                                    10        20        30     || 38        48        58        68        78    ||| 85        95     ||101       111 
                                                             35A|                                             82A||               100A|||            
                                                              35B                                              82B|                100B||            
                                                                                                                82C                 100C|            
                                                                                                                                     100D            


Chain K from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.............hhh.ee..eee.hhhh...hhhhhhhh..........eee...ee...eeeee.........................eeeeeeee..............eeee..eee..........eeee..ee...hhhhhh...eeeee.......eeeeee..eee.......hhhhhhhhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ken K   33 IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNRKIRSEELSF  308
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182    || 213       223       233       243       253       263       273    || 303     
                                                                                                                                                                                    187|                                                                  278|         
                                                                                                                                                                                     209                                                                   299         


Chain M from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee.......hhhhhhhhhh.hhhhhheeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5ken M  503 AIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDW  615
                                   512       522       532       542       552       562       572       582       592       602       612   


Chain N from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eee.....eeeeeee.hhhhhhh..eeeeee.....eeeeee......eee........eeeeehhh.eeeeee...hhhh.eeee..................eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                5ken N    1 EVQLQESGPELEMPGASVKISCKASGSSFTGFSMNWVKQSNGKSLEWIGNIDTYYGGTTYNQKFKGKATLTVDKSSSTAYMQLKSLTSEDSAVYYCARSAYYGSTFAYWGQGTLVTVS  112
                                    10        20        30        40        50  |     59        69        79   |||  86        96    || 104        
                                                                              52A                            82A||               100A|            
                                                                                                              82B|                100B            
                                                                                                               82C                                


Chain O from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                5ken O    1 DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLIEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYFCQHHFGTPFTFGSGTELEIK  107
                                    10        20        30        40        50        60        70        80        90       100       


Chain P from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                5ken P    1 DIVMTQSPLSLSTSVGDRVSLTCKASQNVGTAVAWYQQKPGQSPKLLIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELR  107
                                    10        20        30        40        50        60        70        80        90       100       


Chain Q from PDB  Type:PROTEIN  Length:121
                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeeeeeeee..........eeeeeeehhhh..eeeeeee...eeeehhhhhh.eeeeeehhh.eeeeeeeeehhhhheeeeeee...........ee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                5ken Q    1 DVKLLESGGGLVQPGGSLKLSCAASGFSLSTSGVGVGWFRQPSGKGLEWLALIWWDDDKYYNPSLKSQLSISKDFSRNQVFLKISNVDIADTATYYCARRDPFGYDNAMGYWGQGTSVTVS  112
                                    10        20        30     || 38        48        58        68        78    ||| 85        95     ||101       111 
                                                             35A|                                             82A||               100A|||            
                                                              35B                                              82B|                100B||            
                                                                                                                82C                 100C|            
                                                                                                                                     100D
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KEN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KEN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KEN)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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 Related Entries

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        VGP_EBOZM | Q05320: 2ebo 2rlj 3csy 5fhc 5hj3 5jq3 5jq7 5jqb 5kel 5kem

(-) Related Entries Specified in the PDB File

5kel 5kem