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Biological Unit 3 (Jmol Viewer)

Title :   ZIKA VIRUS NON-STRUCTURAL PROTEIN 1 (NS1)

Authors :   D. L. Akey, W. C. Brown, J. L. Smith

Date :   24 May 16 (Deposition) - 06 Jul 16 (Release) - 21 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A,B  (2x)

Keywords :   Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. C. Brown, D. L. Akey, J. R. Konwerski, J. T. Tarrasch, G. Skiniotis, R. J. Kuhn, J. L. Smith
Extended Surface For Membrane Association In Zika Virus Ns1 Structure.
Nat. Struct. Mol. Biol. V. 23 865 2016
PubMed-ID: 27455458 | Reference-DOI: 10.1038/NSMB.3268

Molecule 1 - ZIKA VIRUS PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	UNIDENTIFIED BACULOVIRUS
	Expression System Taxid	:	10469
	Organism Common	:	ZIKV
	Organism Scientific	:	ZIKA VIRUS
	Organism Taxid	:	64320
	Strain	:	MR 766

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B
Biological Unit 3 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 12)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 24)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	10	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 24)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SO4	10	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:261 , ARG A:294 , HOH A:507 , HOH A:509	binding site for residue SO4 A 403
02	AC2	SOFTWARE	ALA A:303 , SER A:304 , PRO B:341 , GLU B:342 , SER B:343 , HOH B:544 , HOH B:584 , HOH B:603 , HOH B:643 , HOH B:660	binding site for residue SO4 B 403
03	AC3	SOFTWARE	THR B:302 , SER B:304 , ARG B:306 , HOH B:524 , HOH B:540	binding site for residue SO4 B 404
04	AC4	SOFTWARE	ARG B:261 , ARG B:294 , HOH B:507 , HOH B:563 , HOH B:853	binding site for residue SO4 B 405
05	AC5	SOFTWARE	ARG B:261 , THR B:293 , ARG B:294 , ARG B:314 , HOH B:507 , HOH B:734	binding site for residue SO4 B 406
06	AC6	SOFTWARE	GLU A:224 , LYS A:245 , GLU B:52 , GLY B:53 , GLN B:102 , HIS B:147	binding site for residue GOL B 407
07	AC7	SOFTWARE	GLY A:53 , LYS B:265 , THR B:351 , HOH B:504 , HOH B:688 , HOH B:861	binding site for residue GOL B 408
08	AC8	SOFTWARE	SER B:92 , GLY B:137 , ASP B:138 , HOH B:666	binding site for residue GOL B 409
09	AC9	SOFTWARE	ASN A:130 , ARG A:299 , ALA A:303 , ASP A:327 , HOH A:520 , HOH A:584 , HOH A:686 , HOH A:706 , HOH A:714 , HOH A:775 , HOH A:801 , HOH A:940	binding site for Mono-Saccharide NAG A 401 bound to ASN A 130
10	AD1	SOFTWARE	ARG A:191 , ASN A:207 , ASP A:208 , ARG A:211 , HOH A:526 , HOH A:850	binding site for Mono-Saccharide NAG A 402 bound to ASN A 207
11	AD2	SOFTWARE	ASN B:130 , HOH B:838	binding site for Mono-Saccharide NAG B 401 bound to ASN B 130
12	AD3	SOFTWARE	ASN B:207 , ARG B:211 , HOH B:502 , HOH B:602	binding site for Mono-Saccharide NAG B 402 bound to ASN B 207

Asymmetric Unit

No.	Residues
1	A:4	-	A:15
2	A:55	-	A:143
3	A:179	-	A:223
4	A:280	-	A:329
5	A:291	-	A:312
6	A:313	-	A:316
7	B:4	-	B:15
8	B:55	-	B:143
9	B:179	-	B:223
10	B:280	-	B:329
11	B:291	-	B:312
12	B:313	-	B:316

Asymmetric Unit

No.	Residues
1	Asn A:95	-	Pro A:96
2	Met A:318	-	Pro A:319
3	Asn B:95	-	Pro B:96
4	Met B:318	-	Pro B:319

(no "SAP(SNP)/Variant" information available for 5K6K)

(no "PROSITE Motif" information available for 5K6K)

(no "Exon" information available for 5K6K)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeeeeeee.........eeeee.hhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhhhh....eeee.................................eeee........hhh.ee...eeeeeee.....eeeeeee........hhhh.eeeee..eeeee...eeeeeee...eeeeeeee........hhhhh......hhhhh..hhhhh...hhhhh................eeeee......eeee......................eeee.......eeeee..eeee....ee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k6k A  -5 YFQSNADVGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVSRMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPSYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 352
                                     4        14        24        34        44        54        64        74        84        94       104       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352
                                                                                                                                               112|                                                                                                                                                                                                                                       
                                                                                                                                                121

Chain B from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeeeeeee.........eeeee.hhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhhhh....eeee............................hhhhh........eeee........hhh.ee...eeeeeee.....eeeeeee........hhhh.eeeee..eeeee...eeeeeee...eeeeeeee........hhhhh......hhhhh..hhhhh...hhhhh................eeeee......eeee......................eeee.......eeeee..eeee....ee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k6k B  -1 NADVGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVSRMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 352
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5K6K)

(no "CATH Domain" information available for 5K6K)

(no "Pfam Domain" information available for 5K6K)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Asn A:95 - Pro A:96	[ RasMol ]
		Asn B:95 - Pro B:96	[ RasMol ]
		Met A:318 - Pro A:319	[ RasMol ]
		Met B:318 - Pro B:319	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (12, 12)

Cis Peptide Bonds (4, 4)

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