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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PHOSPHATASE PRL-2 IN COMPLEX WITH THE ADP-BOUND BATEMAN DOMAIN OF HUMAN MAGNESIUM TRANSPORTER CNNM3
 
Authors :  I. Gulerez, G. Kozlov, K. Gehring
Date :  18 May 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A,C  (2x)
Keywords :  Complex, Phosphatase, Magnesium Transporter, Protein Binding, Hydrolase, Hydrolase-Transporter Protein-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Gulerez, Y. Funato, H. Wu, M. Yang, G. Kozlov, H. Miki, K. Gehring
Structural Basis Of Prl Phosphatase Binding To The Cnnm3 Magnesium Transporter
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN TYROSINE PHOSPHATASE TYPE IVA 2
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PDEST17
    Gene: PTP4A2, PRL2, PTPCAAX2, BM-008
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HU-PP-1,OV-1,PTP(CAAXII),PROTEIN-TYROSINE PHOSPHATASE 4A2, PROTEIN-TYROSINE PHOSPHATASE OF REGENERATING LIVER 2,PRL-2
 
Molecule 2 - METAL TRANSPORTER CNNM3
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST15
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: CNNM3, ACDP3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANCIENT CONSERVED DOMAIN-CONTAINING PROTEIN 3,CYCLIN-M3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (2x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR C:319 , ASP C:323 , CYS C:324 , PHE C:325 , GLY C:345 , HIS C:346 , THR C:347 , ARG C:348 , PRO C:350 , HIS C:412 , LEU C:434 , THR C:436 , GLU C:438 , ASP C:439binding site for residue ADP C 501

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:46 -A:101

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K25)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K25)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K25)

(-) Exons   (0, 0)

(no "Exon" information available for 5K25)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eeeee..eeeeee...hhhhhhhhhhhhhhhheeeeee.......hhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k25 A  -1 FAMNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRL 155
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhh.ee.hhh..ee.....hhhhhhhhhhhh..eeeee......eeeeee.hhhh........hhhhhhh.......eee...hhhhhhhhhhhh...eeeeee...........eeeeeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k25 C 297 QGPLNMIQGVLELRCRTVEDVLTPLEDCFMLDASTVLDFGVLASIMQSGHTRIPVYEEERSNIVDMLYLKDLAFVDPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIR 446
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K25)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K25)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K25)

(-) Gene Ontology  (19, 21)

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  5k25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNNM3_HUMAN | Q8NE01: 5k22 5k23 5tsr
        TP4A2_HUMAN | Q12974: 5k22 5k23

(-) Related Entries Specified in the PDB File

5k22 5k23 5k24