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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN PHOSPHATASE PRL-2 IN THE OXIDIZED STATE WITH THE BATEMAN DOMAIN OF MURINE MAGNESIUM TRANSPORTER CNNM3
 
Authors :  G. Kozlov, I. Gulerez, K. Gehring
Date :  18 May 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Complex, Phosphatase, Magnesium Transporter, Protein Binding, Hydrolase, Hydrolase-Transporter Protein-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Gulerez, Y. Funato, H. Wu, M. Yang, G. Kozlov, H. Miki, K. Gehring
Structural Basis Of Prl Phosphatase Binding To The Cnnm3 Magnesium Transporter
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN TYROSINE PHOSPHATASE TYPE IVA 2
    Chains: A, B
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PET15B
    Gene: PTP4A2, PRL2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: PROTEIN-TYROSINE PHOSPHATASE 4A2,PROTEIN-TYROSINE PHOSPHATASE OF REGENERATING LIVER 2,PRL-2
 
Molecule 2 - METAL TRANSPORTER CNNM3
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PGEX
    Gene: CNNM3, ACDP3
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ANCIENT CONSERVED DOMAIN-CONTAINING PROTEIN 3,MACDP3,CYCLIN- M3

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS D:404 , ASP D:406binding site for residue FLC D 501

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:46 -A:101
2B:46 -B:101

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu C:380 -Asp C:381
2Glu D:380 -Asp D:381

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K24)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K24)

(-) Exons   (0, 0)

(no "Exon" information available for 5K24)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee.......hhhhhhhhhhhhheeeeee.......hhhhhh...eeee.........hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k24 A   3 RPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMR 154
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  


Chain B from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee.......hhhhhhhhhhhhheeeeee.......hhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k24 B   5 APVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKM 153
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144         


Chain C from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhee.hhh..ee...eehhhhhhhhhhhh..eeeee......eeeeeehhhhhh......eehhhhhhhhh....eee...hhhhhhhhhhhh...eeeeeeee.......eeeeeeeeehhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k24 C 317 SRTVEDVLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVYEEERSNIVDMLYLKDLAIVEPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIKS 453
                                   326       336       346       356       366       376       386       396       406       416       426       436       446       


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhee.hhh..ee...eehhhhhhhhhhhh..eeeee......eeeeeehhhhh.......eehhhhhhhhh....eee...hhhhhhhhhhhh...eeeeeeee.......eeeeeeeeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k24 D 318 RTVEDVLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVYEEERSNIVDMLYLKDLAIVEPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEIIK 452
                                   327       337       347       357       367       377       387       397       407       417       427       437       447
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K24)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K24)

(-) Gene Ontology  (19, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

5k22 5k23 5k25