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(-) Description

Title :  CRYSTAL STRUCTURE OF FLURBIPROFEN BOUND TO S121P MURINE COX-2 MUTANT
 
Authors :  M. G. Malkowski, B. J. Orlando
Date :  11 May 16  (Deposition) - 26 Oct 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cyclooxygenase, Cox-2, Flurbiprofen, Fbp, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Malkowski, B. J. Orlando
Crystal Structure Of S121P Cox-2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROSTAGLANDIN G/H SYNTHASE 2
    Chains: A, B
    EC Number: 1.14.99.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: PTGS2, COX-2, COX2, PGHS-B, TIS10
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CYCLOOXYGENASE-2,COX-2,GLUCOCORTICOID-REGULATED INFLAMMATORY CYCLOOXYGENASE,GRIPGHS,MACROPHAGE ACTIVATION-ASSOCIATED MARKER PROTEIN P71/73,PES-2,PHS II,PROSTAGLANDIN H2 SYNTHASE 2,PGHS-2, PROSTAGLANDIN-ENDOPEROXIDE SYNTHASE 2,TIS10 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 20)

Asymmetric/Biological Unit (7, 20)
No.NameCountTypeFull Name
1AKR4Ligand/IonACRYLIC ACID
2BMA1Ligand/IonBETA-D-MANNOSE
3BOG2Ligand/IonB-OCTYLGLUCOSIDE
4COH2Ligand/IonPROTOPORPHYRIN IX CONTAINING CO
5EDO1Ligand/Ion1,2-ETHANEDIOL
6FLP2Ligand/IonFLURBIPROFEN
7NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:117 , ARG A:121 , VAL A:350 , LEU A:353 , TYR A:356 , TYR A:386 , TRP A:388 , VAL A:524 , GLY A:527 , ALA A:528 , SER A:531binding site for residue FLP A 601
02AC2SOFTWAREVAL A:89 , TYR A:116 , VAL A:117 , SER A:120 , ARG A:121 , LEU A:124binding site for residue BOG A 602
03AC3SOFTWARETYR A:149 , HIS A:208 , PHE A:211 , THR A:213 , HIS A:215 , LEU A:295 , ASN A:383 , TYR A:386 , HIS A:387 , LEU A:392 , VAL A:448binding site for residue COH A 603
04AC4SOFTWARELYS A:181 , ARG A:185 , ARG A:186 , ARG A:439 , GLU A:487 , GLU A:491 , GLU B:180 , ARG B:185 , ARG B:186 , ILE B:443 , GLN B:446binding site for residue BOG A 604
05AC5SOFTWAREASP A:240 , ARG A:241 , GLU A:273binding site for residue AKR A 610
06AC6SOFTWARESER A:478 , PHE A:479 , GLU A:480 , ALA A:489 , LYS A:493binding site for residue AKR A 611
07AC7SOFTWAREVAL B:117 , ARG B:121 , VAL B:350 , TYR B:356 , TYR B:386 , TRP B:388 , GLY B:527 , ALA B:528 , SER B:531binding site for residue FLP B 601
08AC8SOFTWAREALA B:200 , GLN B:204 , HIS B:208 , PHE B:211 , THR B:213 , ASN B:383 , TYR B:386 , HIS B:387 , LEU B:392 , VAL B:448 , GLN B:455binding site for residue COH B 602
09AC9SOFTWARELYS B:252 , TYR B:255 , VAL B:262 , ASN B:311binding site for residue EDO B 607
10AD1SOFTWARETHR B:238 , ARG B:241 , LYS B:244 , VAL B:272 , GLU B:273binding site for residue AKR B 608
11AD2SOFTWARESER B:478 , PHE B:479 , GLU B:480 , LYS B:493binding site for residue AKR B 609
12AD3SOFTWARETYR A:55 , GLU A:67 , ASN A:68 , HOH A:725binding site for Mono-Saccharide NAG E 605 bound to ASN E 68
13AD4SOFTWAREGLU A:141 , ASN A:145 , TYR A:148 , ARG A:217 , HOH A:711 , LEU B:239 , ASP B:240binding site for Poly-Saccharide residues NAG E 606 through BMA E 608 bound to ASN E 145
14AD5SOFTWAREGLN A:407 , ASN A:411 , SER A:413 , ILE A:414 , GLU A:417binding site for Mono-Saccharide NAG E 609 bound to ASN E 411
15AD6SOFTWARETYR B:55 , GLU B:67 , ASN B:68 , HOH B:727binding site for Mono-Saccharide NAG F 603 bound to ASN F 68
16AD7SOFTWARELEU A:239 , GLU B:141 , ASN B:145 , TYR B:148 , ARG B:217 , HOH B:708binding site for Poly-Saccharide residues NAG F 604 through NAG F 605 bound to ASN F 145
17AD8SOFTWAREGLN B:407 , ASN B:411 , ILE B:414 , GLU B:417binding site for Mono-Saccharide NAG F 606 bound to ASN F 411

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:36 -A:47
2A:37 -A:160
3A:41 -A:57
4A:59 -A:69
5A:570 -A:576
6B:36 -B:47
7B:37 -B:160
8B:41 -B:57
9B:59 -B:69
10B:570 -B:576

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:127 -Pro A:128
2Ser B:127 -Pro B:128

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JVZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JVZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5JVZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeee.....eeee.....ee.....eehhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhh....ee......................hhhhhhhhhh............hhhhhhhhhhhhh......................hhhhhh.hhhhhhhhh.........eee..eee..hhhhhh.........hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh..........hhhhhhhh.hhhhh...eee..eeehhhhhh..hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jvz A  33 HHPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRPYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQ 584
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582  


Chain B from PDB  Type:PROTEIN  Length:551
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.....eeee.....ee.....eehhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.....ee......hhhhhhh....ee......................hhhhhhhhhh............hhhhhhhhhhhhh......................hhhhhh.hhhhhhhhh.........eee..eee..hhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh..........hhhhhhhhhhhhhh...eee..eeehhhhhh..hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh...hhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jvz B  33 HHPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRPYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNV 583
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JVZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JVZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JVZ)

(-) Gene Ontology  (85, 85)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGH2_MOUSE | Q05769: 1cvu 1cx2 1dcx 1dd0 1ddx 1pxx 3hs5 3hs6 3hs7 3krk 3ln0 3ln1 3mdl 3mqe 3nt1 3ntb 3ntg 3olt 3olu 3pgh 3q7d 3qh0 3qmo 3rr3 3tzi 4cox 4e1g 4fm5 4m10 4m11 4otj 4oty 4ph9 4rrw 4rrx 4rry 4rrz 4rs0 4rut 4z0l 5cox 5fdq 5jvy 5jw1 6cox

(-) Related Entries Specified in the PDB File

5jvy S121P MUCOX-2 WITH EMPTY CYCLOOXYGENASE ACTIVE SITE
5jw1