Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  UNINHIBITED MOUSE CYCLOOXYGENASE-2 (PROSTAGLANDIN SYNTHASE-2)
 
Authors :  R. Kurumbail, W. Stallings
Date :  18 Dec 96  (Deposition) - 24 Dec 97  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Peroxidase, Dioxygenase, Cyclooxygenase, Nonsteroidal Antiinflammatory Drugs, Inflammation, Arthritis, Prostaglandin, Prostaglandin Synthase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. G. Kurumbail, A. M. Stevens, J. K. Gierse, J. J. Mcdonald, R. A. Stegeman, J. Y. Pak, D. Gildehaus, J. M. Miyashiro, T. D. Penning, K. Seibert, P. C. Isakson, W. C. Stallings
Structural Basis For Selective Inhibition Of Cyclooxygenase-2 By Anti-Inflammatory Agents.
Nature V. 384 644 1996
PubMed-ID: 8967954  |  Reference-DOI: 10.1038/384644A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYCLOOXYGENASE-2
    CellFIBROBLAST
    Cellular LocationENDOPLASMIC RETICULUM
    ChainsA, B, C, D
    EC Number1.14.99.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineCULTURED SF21
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System TissueOVARIAN TISSUE
    Expression System VectorPVL1393
    Expression System Vector TypeBACULOVIRUS
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymPROSTAGLANDIN SYNTHASE-2
    TissueDERMAL

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:55 , ASN A:68 , THR A:70BINDING SITE FOR RESIDUE NAG A 661
02AC2SOFTWAREGLU A:140 , ASN A:144 , SER A:146 , TYR A:147BINDING SITE FOR RESIDUE NAG A 671
03AC3SOFTWARETYR A:402 , GLN A:406 , ASN A:410 , ILE A:413BINDING SITE FOR RESIDUE NAG A 681
04AC4SOFTWARESER B:38 , TYR B:55 , GLU B:67 , ASN B:68 , THR B:70BINDING SITE FOR RESIDUE NAG B 661
05AC5SOFTWAREGLU B:140 , ASN B:144 , TYR B:147 , ARG B:216BINDING SITE FOR RESIDUE NAG B 671
06AC6SOFTWARETYR B:402 , LYS B:405 , GLN B:406 , ASN B:410 , ILE B:413BINDING SITE FOR RESIDUE NAG B 681
07AC7SOFTWARESER C:38 , TYR C:55 , GLU C:67 , ASN C:68 , THR C:70BINDING SITE FOR RESIDUE NAG C 661
08AC8SOFTWARETYR C:134 , GLU C:140 , ASN C:144 , SER C:146 , TYR C:147 , ARG C:216BINDING SITE FOR RESIDUE NAG C 671
09AC9SOFTWARETYR C:402 , GLN C:406 , ASN C:410 , ILE C:413BINDING SITE FOR RESIDUE NAG C 681
10ACEUNKNOWNSER A:530SER 530 IS ACETYLATED BY ASPIRIN (AN ACETYL GROUP IS COVALENTLY ATTACHED TO THE PROTEIN WHEN INHIBITED WITH ASPIRIN). THE ACETYLATED SER PREVENTS THE PROPER BINDING OF THE SUBSTRATE IN THE CYCLOOXYGENASE ACTIVE SITE. IT HAS BEEN RECENTLY SHOWN, HOWEVER, THAT ACETYLATION OF CYCLOOXYGENASE-2 RESULTS IN THE FORMATION OF A DIFFERENT PRODUCT (15-HETE).
11BC1SOFTWARESER D:38 , PRO D:40 , TYR D:55 , GLU D:67 , ASN D:68BINDING SITE FOR RESIDUE NAG D 661
12BC2SOFTWAREGLU D:140 , ASN D:144 , TYR D:147 , ARG D:216BINDING SITE FOR RESIDUE NAG D 671
13BC3SOFTWARELYS D:405 , GLN D:406 , ASN D:410 , SER D:412 , ILE D:413 , GLU D:416BINDING SITE FOR RESIDUE NAG D 681
14BC4SOFTWAREALA A:199 , PHE A:200 , GLN A:203 , HIS A:207 , THR A:212 , ASN A:382 , TYR A:385 , HIS A:386 , TRP A:387 , HIS A:388 , LEU A:391 , GLN A:454BINDING SITE FOR RESIDUE HEM A 682
15BC5SOFTWAREALA B:199 , PHE B:200 , GLN B:203 , HIS B:207 , PHE B:210 , THR B:212 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391 , GLN B:454BINDING SITE FOR RESIDUE HEM B 682
16BC6SOFTWAREALA C:199 , PHE C:200 , GLN C:203 , HIS C:207 , THR C:212 , VAL C:295 , ASN C:382 , TYR C:385 , HIS C:386 , TRP C:387 , HIS C:388 , LEU C:391 , LEU C:408 , GLN C:454BINDING SITE FOR RESIDUE HEM C 682
17BC7SOFTWAREALA D:199 , GLN D:203 , HIS D:207 , THR D:212 , VAL D:295 , ASN D:382 , TYR D:385 , HIS D:386 , TRP D:387 , HIS D:388 , LEU D:391 , GLN D:454BINDING SITE FOR RESIDUE HEM D 682
18CATUNKNOWNTYR A:385TYR 385 IS BELIEVED TO BE THE AMINO ACID THAT ABSTRACTS A HYDROGEN ATOM FROM THE SUBSTRATE. IT IS LOCATED CLOSE TO THE HEME. A TYROSINE RADICAL IS FORMED DURING THE COURSE OF THE REACTION.
19HEMUNKNOWNHIS A:388HIS 388 IS THE AXIAL LIGAND TO THE HEME.
20SUBUNKNOWNARG A:120ARGININE 120 IS BELIEVED TO ANCHOR THE CARBOXYLATE OF THE SUBSTRATE BY FORMING AN ION-PAIR.

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:36 -A:47
2A:37 -A:159
3A:41 -A:57
4A:59 -A:69
5A:569 -A:575
6B:36 -B:47
7B:37 -B:159
8B:41 -B:57
9B:59 -B:69
10B:569 -B:575
11C:36 -C:47
12C:37 -C:159
13C:41 -C:57
14C:59 -C:69
15C:569 -C:575
16D:36 -D:47
17D:37 -D:159
18D:41 -D:57
19D:59 -D:69
20D:569 -D:575

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:126 -Pro A:127
2Ser B:126 -Pro B:127
3Ser C:126 -Pro C:127
4Ser D:126 -Pro D:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5COX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5COX)

(-) Exons   (0, 0)

(no "Exon" information available for 5COX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d5coxa2 A:33-73                          d5coxa1 A:74-583 Prostaglandin H2 synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 5coxA01 A:33-73 Laminin                  5coxA02 A:74-583 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhh........eee.....eee................hhhhhhhhh...hhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh...............hhhhh..............................hhhhhhhh..............hhhhhhhhhhhhhh.....................hhhh...hhhhhhh..........eee..eee...hhhh....................hhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.........hhhh............hhhhhh...hhh.............hhhh...hhhhhhh..hhhhhhhh.................hhhhhhhhhhhhh.....hhhhhhh........hhhhh...hhhhhhhhhh..hhh...hhhhh...........hhhhhhhhhhhhhhhh..hhh......hhhh...hhhhhhhh..hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cox A   33 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQ  583
                                    42        52        62        72        82        92       102   |   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581  
                                                                                                  105A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d5coxb2 B:33-73                          d5coxb1 B:74-583 Prostaglandin H2 synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 5coxB01 B:33-73 Laminin                  5coxB02 B:74-583 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhh........eee.....eee................hhhhhhhhh...hhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh...............hhhhh..............................hhhhhhhh..............hhhhhhhhhhhhhh.....................hhhh...hhhhhhh..........eee..eee...hhhh....................hhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.........hhhh............hhhhhh...hhh....eee..eee.hhhh...hhhhhhh..hhhhhhhh.................hhhhhhhhhhhhh.....hhhhhhh........hhhhh...hhhhhhhhhh..hhh...hhhhh...........hhhhhhhhhhhhhhhh..hhh......hhhh...hhhhhhhh..hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cox B   33 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQ  583
                                    42        52        62        72        82        92       102   |   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581  
                                                                                                  105A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d5coxc2 C:33-73                          d5coxc1 C:74-583 Prostaglandin H2 synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 5coxC01 C:33-73 Laminin                  5coxC02 C:74-583 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhh........eee.....eee................hhhhhhhhh...hhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh...............hhhhh..............................hhhhhhhh..............hhhhhhhhhhhhhh.....................hhhh...hhhhhhh..........eee..eee...hhhh....................hhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.........hhhh............hhhhhh...hhh.............hhhh...hhhhhhh..hhhhhhhh.................hhhhhhhhhhhhh.....hhhhhhh........hhhhh...hhhhhhhhhh..hhh...hhhhh...........hhhhhhhhhhhhhhhh..hhh......hhhh...hhhhhhhh..hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cox C   33 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQ  583
                                    42        52        62        72        82        92       102   |   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581  
                                                                                                  105A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              

Chain D from PDB  Type:PROTEIN  Length:552
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d5coxd2 D:33-73                          d5coxd1 D:74-583 Prostaglandin H2 synthase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 5coxD01 D:33-73 Laminin                  5coxD02 D:74-583 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhh........eee.....eee................hhhhhhhhh...hhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh...............hhhhh..............................hhhhhhhh..............hhhhhhhhhhhhhh.....................hhhh...hhhhhhh..........eee..eee...hhhh....................hhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhh.........hhhh............hhhhhh...hhh.............hhhh...hhhhhhh..hhhhhhhh...............hhhhhhhhhhhhhhh.....hhhhhhh........hhhhh...hhhhhhhhhh..hhh...hhhhh...........hhhhhhhhhhhhhhhh..hhh......hhhh...hhhhhhhh..hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cox D   33 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQ  583
                                    42        52        62        72        82        92       102   |   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581  
                                                                                                  105A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5COX)

(-) Gene Ontology  (85, 85)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    HEM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    ACE  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    CAT  [ RasMol ]  +environment [ RasMol ]
    HEM  [ RasMol ]  +environment [ RasMol ]
    SUB  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser A:126 - Pro A:127   [ RasMol ]  
    Ser B:126 - Pro B:127   [ RasMol ]  
    Ser C:126 - Pro C:127   [ RasMol ]  
    Ser D:126 - Pro D:127   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5cox
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PGH2_MOUSE | Q05769
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.14.99.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PGH2_MOUSE | Q05769
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGH2_MOUSE | Q057691cvu 1cx2 1dcx 1dd0 1ddx 1pxx 3hs5 3hs6 3hs7 3krk 3ln0 3ln1 3mdl 3mqe 3nt1 3ntb 3ntg 3olt 3olu 3pgh 3q7d 3qh0 3qmo 3rr3 3tzi 4cox 4e1g 4fm5 4m10 4m11 4otj 4oty 4ph9 4rrw 4rrx 4rry 4rrz 4rs0 4rut 4z0l 5fdq 5jvy 5jvz 5jw1 6cox

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5COX)