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(-) Description

Title :  STRUCTURE OF THE NS3 HELICASE FROM THE FRENCH POLYNESIA STRAIN OF THE ZIKA VIRUS
 
Authors :  R. Jain, J. Coloma, A. K. Aggarwal
Date :  06 May 16  (Deposition) - 06 Jul 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Zika, Flavivirus, Ns3, Helicase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Jain, J. Coloma, A. Garcia-Sastre, A. K. Aggarwal
Structure Of The Ns3 Helicase From Zika Virus.
Nat. Struct. Mol. Biol. V. 23 752 2016
PubMed-ID: 27399257  |  Reference-DOI: 10.1038/NSMB.3258

(-) Compounds

Molecule 1 - HELICASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2POP1Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:323 , THR A:449 , HIS A:450 , ALA A:478 , HOH A:805 , HOH A:973binding site for residue ACT A 701
2AC2SOFTWAREARG A:242 , TYR A:243 , HIS A:252 , HOH A:815 , HOH A:1117binding site for residue ACT A 702
3AC3SOFTWAREVAL A:383 , GLU A:394 , LYS A:397 , GLN A:401binding site for residue ACT A 703
4AC4SOFTWAREARG A:226 , THR A:245 , THR A:246 , HOH A:804 , HOH A:896binding site for residue ACT A 704
5AC5SOFTWAREARG A:388 , THR A:409 , HOH A:814 , HOH A:833 , HOH A:964 , HOH A:1026binding site for residue ACT A 705
6AC6SOFTWARETRP A:581 , THR A:582 , HOH A:999binding site for residue ACT A 706
7AC7SOFTWAREPRO A:196 , GLY A:197 , ALA A:198 , GLY A:199 , LYS A:200 , ASN A:417 , ARG A:459 , ARG A:462 , HOH A:816 , HOH A:857 , HOH A:869 , HOH A:954 , HOH A:1180binding site for residue POP A 707

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JRZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:444 -Pro A:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JRZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JRZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5JRZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...eeeee.........hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh....eee..............eeeeehhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhhh...eeeeee.................eeee...........hhhhhhh...eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeee.hhhhh.......eeee..eeeeeeee...eeeeeeeee.hhhhhhhhhh...........eeee...........hhhhhhhhhhh............hhhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhh......hhhhh..hhhhh.ee..ee.eee.....eee......hhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jrz A 175 PVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR 617
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JRZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JRZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JRZ)

(-) Gene Ontology  (58, 58)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:444 - Pro A:445   [ RasMol ]  
 

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  POLG_ZIKV | Q32ZE1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_ZIKV | Q32ZE1: 5gj4 5gpi 5jps 5k6k 5t1v 5tfr 5tmh 5u04 5u0b 5u0c

(-) Related Entries Specified in the PDB File

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