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(-) Description

Title :  ALGE_CIM
 
Authors :  P. Ma, D. Weichert
Date :  24 Mar 16  (Deposition) - 05 Apr 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Alginate Transporter, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Ma
Alge_1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALGINATE PRODUCTION PROTEIN ALGE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ALGE, ALG76, PA3544
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1LDA2Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2NA1Ligand/IonSODIUM ION
3OLC1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
4PE52Ligand/Ion3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:42 , GLY A:43 , PRO A:75 , TRP A:318 , ALA A:326 , GLY A:327 , PHE A:490binding site for residue LDA A 501
2AC2SOFTWAREGLY A:50 , GLU A:51 , ASN A:67 , ASP A:68 , VAL A:484binding site for residue LDA A 502
3AC3SOFTWARESER A:188 , TYR A:190 , TYR A:274 , LEU A:314 , TYR A:330 , GLN A:378binding site for residue OLC A 503
4AC4SOFTWAREARG A:285 , ASN A:287 , GLN A:303 , GLY A:305 , ASP A:339 , GLY A:340 , GLN A:343 , SER A:408binding site for residue PE5 A 504
5AC5SOFTWAREGLN A:159 , TRP A:160 , TRP A:254 , SER A:277 , THR A:279 , GLY A:311 , GLN A:346 , THR A:347 , LEU A:374binding site for residue PE5 A 505
6AC6SOFTWAREALA A:136 , THR A:139 , TYR A:141 , PRO A:142 , GLU A:144binding site for residue NA A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IYU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:54 -Asp A:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IYU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IYU)

(-) Exons   (0, 0)

(no "Exon" information available for 5IYU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeee...........eeeeeeeeeeeeeeee..eeeeeeeeeeee...................eeeeeeeeeeee........eeeeeeeeeee.......eeeeeeeeeeee...eeeeeeeee..................eeeeeeeeeeeee..eeeeeeeeeeee.................eeeeeeeeeeeeee..........eeeeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeee...hhhhh...........ee........ee............eeeeeeeeeeee...eeeeeeeeeeee.....................eeeeeeeeeeeee...eeeeeeeeeee...........eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iyu A  37 EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF 490
                                    46        56        66        76        86        96       106 ||    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435  ||   461       471       481         
                                                                                                 108|                                                                                                                                                                                                                                                                                                                             438|                                   
                                                                                                  118                                                                                                                                                                                                                                                                                                                              455
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IYU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IYU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IYU)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALGE_PSEAE | P18895: 3rbh 4afk 4azl 4b61 4xnk 4xnl 5d5d

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