4B61 - JenaLib

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Title :   IN MESO STRUCTURE OF ALGINATE TRANSPORTER, ALGE, FROM PSEUDOMOAS AERUGINOSA, PAO1. CRYSTAL FORM 3.

Authors :   J. Tan, V. E. Pye, D. Aragao, M. Caffrey

Date :   08 Aug 12 (Deposition) - 17 Jul 13 (Release) - 30 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Membrane Protein, Outer Membrane, In Meso Crystallisation, Lipidic Cubic Phase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Tan, S. L. Rouse, D. Li, V. E. Pye, L. Vogeley, A. R. Brinth, T. El Arnaout, J. C. Whitney, P. L. Howell, M. S. P. Sansom, M. Caffrey
A Conformational Landscape For Alginate Secretion Across The Outer Membrane Of Pseudomonas Aeruginosa.
Acta Crystallogr. , Sect. D V. 70 2054 2014
PubMed-ID: 25084326 | Reference-DOI: 10.1107/S1399004714001850

Molecule 1 - ALGINATE PRODUCTION PROTEIN ALGE
	Atcc	:	15692
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	ALGE-PET200/D-TOPO
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	STAR
	Expression System Vector	:	PET200-D-TOPO
	Fragment	:	RESIDUES 33-490
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA PAO1
	Organism Taxid	:	208964
	Other Details	:	HOLLOWAY COLLECTION
	Synonym	:	ALGE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 31)

No.	Name	Count	Type	Full Name
1	78M	22	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2	78N	2	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3	ACT	1	Ligand/Ion	ACETATE ION
4	CU	4	Ligand/Ion	COPPER (II) ION
5	LDA	1	Ligand/Ion	LAURYL DIMETHYLAMINE-N-OXIDE
6	MG	1	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (4, 15)

No.	Name	Count	Type	Full Name
1	78M	11	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2	78N	2	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3	ACT	1	Ligand/Ion	ACETATE ION
4	CU	-1	Ligand/Ion	COPPER (II) ION
5	LDA	1	Ligand/Ion	LAURYL DIMETHYLAMINE-N-OXIDE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 11)

No.	Name	Count	Type	Full Name
1	78M	11	Ligand/Ion	(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2	78N	-1	Ligand/Ion	(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3	ACT	-1	Ligand/Ion	ACETATE ION
4	CU	-1	Ligand/Ion	COPPER (II) ION
5	LDA	-1	Ligand/Ion	LAURYL DIMETHYLAMINE-N-OXIDE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:41 , PHE A:42 , ALA A:77 , PHE A:78 , GLY A:79 , PHE A:88 , PHE A:131 , TRP A:132	BINDING SITE FOR RESIDUE 78M A1492
02	AC2	SOFTWARE	LEU A:430 , GLY A:462 , GLY A:463 , LEU A:464 , THR A:478 , HIS A:480	BINDING SITE FOR RESIDUE 78M A1493
03	AC3	SOFTWARE	ASP A:321 , TRP A:324 , 78M A:1496 , 78N A:1506	BINDING SITE FOR RESIDUE 78M A1494
04	AC4	SOFTWARE	ALA A:94 , ALA A:95 , TRP B:280	BINDING SITE FOR RESIDUE 78M B1491
05	AC5	SOFTWARE	PHE B:148 , GLU B:166 , ALA B:167	BINDING SITE FOR RESIDUE 78M B1492
06	AC6	SOFTWARE	ALA B:127 , TYR B:190 , ARG B:191	BINDING SITE FOR RESIDUE 78M B1493
07	AC7	SOFTWARE	TRP A:318 , ILE A:320 , 78M A:1496	BINDING SITE FOR RESIDUE 78M A1495
08	AC8	SOFTWARE	78M A:1494 , 78M A:1495 , TYR B:141 , PHE B:172 , THR B:174	BINDING SITE FOR RESIDUE 78M A1496
09	AC9	SOFTWARE	VAL A:207	BINDING SITE FOR RESIDUE 78M A1498
10	BC1	SOFTWARE	THR A:96 , ASN B:308 , PHE B:310	BINDING SITE FOR RESIDUE 78M B1494
11	BC2	SOFTWARE	GLY B:43 , PHE B:490	BINDING SITE FOR RESIDUE 78M B1495
12	BC3	SOFTWARE	ILE A:225 , THR A:253 , ALA B:92 , LEU B:126	BINDING SITE FOR RESIDUE 78M B1496
13	BC4	SOFTWARE	PHE B:208	BINDING SITE FOR RESIDUE 78M B1497
14	BC5	SOFTWARE	PHE A:148 , ALA A:167	BINDING SITE FOR RESIDUE 78M A1500
15	BC6	SOFTWARE	ILE B:211 , THR B:213 , VAL B:223	BINDING SITE FOR RESIDUE 78M B1498
16	BC7	SOFTWARE	LEU B:177 , ILE B:211	BINDING SITE FOR RESIDUE 78M A1501
17	BC8	SOFTWARE	ALA A:127 , ALA A:128 , TYR A:190 , ARG A:191 , THR A:192 , LEU A:194	BINDING SITE FOR RESIDUE LDA A1502
18	BC9	SOFTWARE	ALA A:136 , THR A:139 , TYR A:141 , GLU A:144 , HOH A:2019	BINDING SITE FOR RESIDUE MG A1503
19	CC1	SOFTWARE	HIS A:218 , ACT A:1508 , HOH A:2112	BINDING SITE FOR RESIDUE CU A1504
20	CC2	SOFTWARE	ASP A:55 , ASP A:57 , ALA A:61 , GLY A:63	BINDING SITE FOR RESIDUE CU A1505
21	CC3	SOFTWARE	ASP B:55 , ASP B:57 , ALA B:61 , GLY B:63	BINDING SITE FOR RESIDUE CU B1499
22	CC4	SOFTWARE	HIS B:145 , HOH B:2026 , HOH B:2027 , HOH B:2090	BINDING SITE FOR RESIDUE CU B1500
23	CC5	SOFTWARE	ASN A:308 , ALA A:309 , PHE A:310 , ARG A:332 , GLU A:342 , ASN B:67 , ILE B:69 , THR B:96	BINDING SITE FOR RESIDUE 78M B1501
24	CC6	SOFTWARE	TRP A:215 , ILE B:48 , PHE B:438 , LYS B:439 , GLN B:440 , VAL B:484 , TRP B:488	BINDING SITE FOR RESIDUE 78M B1502
25	CC7	SOFTWARE	PRO B:39 , ASN B:41 , PHE B:78 , GLY B:79 , GLN B:80 , TRP B:81 , ALA B:86 , TYR B:87 , PHE B:131 , TRP B:132 , HOH B:2001 , HOH B:2091	BINDING SITE FOR RESIDUE 78M B1503
26	CC8	SOFTWARE	GLY A:384 , LEU A:388 , TYR A:392 , 78M A:1494 , 78N A:1507 , ASP B:83 , TRP B:84 , TYR B:135	BINDING SITE FOR RESIDUE 78N A1506
27	CC9	SOFTWARE	TYR A:392 , ILE A:458 , PHE A:460 , 78N A:1506	BINDING SITE FOR RESIDUE 78N A1507
28	DC1	SOFTWARE	PRO A:217 , HIS A:218 , CU A:1504	BINDING SITE FOR RESIDUE ACT A1508

(no "SS Bond" information available for 4B61)

Asymmetric Unit

No.	Residues
1	Asn A:54	-	Asp A:55
2	Asn B:54	-	Asp B:55

(no "SAP(SNP)/Variant" information available for 4B61)

(no "PROSITE Motif" information available for 4B61)

(no "Exon" information available for 4B61)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:429
 aligned with ALGE_PSEAE | P18895 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:452
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488  
           ALGE_PSEAE    39 PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF 490
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeee...........eeeeeeeeeeeeeeee..eeeeeeeeeeee..........----------hhhhh...eeeeeeeeeeee........eeeeeeeeeee.......eeeeeeeeeeee...eeeeeeeee...................eeeeeeeeeeee..eeeeeeeeeee..................eeeeeeeeeeeeee..........eeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeee...hhhhh...........ee........ee.......ee...eeeeeeeeeeee...eeeeeeeeeeee.......ee............eeeeeeeeeeeee...-------------...eeeeeeeeeee...........eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b61 A  39 PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQ----------NDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQ-------------PSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF 490
                                    48        58        68        78        88        98      |  -       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438 |       -     | 458       468       478       488  
                                                                                            105        116                                                                                                                                                                                                                                                                                                                                 440           454

Chain B from PDB  Type:PROTEIN  Length:439
 aligned with ALGE_PSEAE | P18895 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:453
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487   
           ALGE_PSEAE    38 APKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF 490
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeee...........eeeeeeeeeeeeeeee..eeeeeeeeeeee..........-----------.......eeeeeeeeeeee.......eeeeeeeeeeee.......eeeeeeeeeeee...eeeeeeeee...................eeeeeeeeeeee..eeeeeeeeeee..................eeeeeeeeeeeeee..........eeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeee...hhhhh...........ee........ee.......ee...eeeeeeeeeeee...eeeeeeeeeeee.......ee............eeeeeeeeeeeee.........hhhhh.....eeeeeeeeeee....---....eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b61 B  38 APKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQ-----------DGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAY---TDSTMHRAFVDFIWRF 490
                                    47        57        67        77        87        97       | -       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467   |   477       487   
                                                                                             105         117                                                                                                                                                                                                                                                                                                                                                               471 475

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4B61)

(no "CATH Domain" information available for 4B61)

(no "Pfam Domain" information available for 4B61)

Asymmetric Unit(hide GO term definitions)

Chain A,B (ALGE_PSEAE | P18895)

biological process
	GO:0042121	alginic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		78M	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Asn A:54 - Asp A:55	[ RasMol ]
		Asn B:54 - Asp B:55	[ RasMol ]

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	4b61
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UniProtKB/Swiss-Prot
	ALGE_PSEAE \| P18895	:	3rbh 4afk 4azl 4xnk 4xnl 5d5d 5iyu

4afk	IN MESO STRUCTURE OF ALGINATE TRANSPORTER, ALGE, FROM PSEUDOMONAS AERUGINOSA, PAO1
4azl	IN MESO STRUCTURE OF ALGINATE TRANSPORTER, ALGE, FROM PSEUDOMOAS AERUGINOSA, PAO1, CRYSTAL FORM 2.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 31)

Sites (28, 28)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (3, 3)

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