5IUN - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE DESK-DESR COMPLEX IN THE PHOSPHATASE STATE

Authors :   F. Trajtenberg, J. A. Imelio, N. Larrieux, A. Buschiazzo

Date :   18 Mar 16 (Deposition) - 21 Dec 16 (Release) - 28 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.79

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F  (2x)
Biol. Unit 3: A,B,C,D,E,F  (2x)

Keywords :   Two-Component Regulatory System, Kinase, Response Regulator, Phosphatase Complex, Dephosphorylation, Transferase, Transferase- Gene Regulation Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Trajtenberg, J. A. Imelio, M. R. Machado, N. Larrieux, M. A. Marti, G. Obal, A. E. Mechaly, A. Buschiazzo
Regulation Of Signaling Directionality Revealed By 3D Snapshots Of A Kinase:Regulator Complex In Action.
Elife V. 5 2016
PubMed-ID: 27938660 | Reference-DOI: 10.7554/ELIFE.21422

Molecule 1 - SENSOR HISTIDINE KINASE DESK
	Chains	:	A, B, E
	EC Number	:	2.7.13.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PACYC-DUET-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	DESK, YOCF, BSU19190
	Mutation	:	YES
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	224308
	Strain	:	168

Molecule 2 - TRANSCRIPTIONAL REGULATORY PROTEIN DESR
	Chains	:	C, D, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PACYC-DUET-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RECEIVER DOMAIN
	Gene	:	DESR, YOCG, BSU19200
	Organism Scientific	:	BACILLUS SUBTILIS (STRAIN 168)
	Organism Taxid	:	224308
	Strain	:	168

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (2x)	:					E	F
Biological Unit 3 (2x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 14)

No.	Name	Count	Type	Full Name
1	ACP	3	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	BEF	3	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
3	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	MG	6	Ligand/Ion	MAGNESIUM ION
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 6)

No.	Name	Count	Type	Full Name
1	ACP	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	BEF	2	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
3	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	ACP	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	BEF	2	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
3	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 16)

No.	Name	Count	Type	Full Name
1	ACP	6	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	BEF	6	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
3	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:289 , ASN A:293 , LYS A:296 , HIS A:297 , SER A:298 , ASP A:320 , THR A:323 , PHE A:324 , LYS A:325 , GLY A:326 , HIS A:335 , GLY A:336 , LEU A:337 , THR A:359 , MG A:402 , HOH A:501	binding site for residue ACP A 401
02	AC2	SOFTWARE	GLU A:289 , ASN A:293 , ACP A:401 , HOH A:501	binding site for residue MG A 402
03	AC3	SOFTWARE	GLN A:215 , ARG A:218 , GLY F:31 , LYS F:32 , PHE F:42	binding site for residue MES A 403
04	AC4	SOFTWARE	GLU B:289 , ASN B:293 , LYS B:296 , HIS B:297 , SER B:298 , ASP B:320 , THR B:323 , PHE B:324 , LYS B:325 , GLY B:326 , HIS B:335 , GLY B:336 , LEU B:337 , THR B:359 , MG B:402 , HOH B:501	binding site for residue ACP B 401
05	AC5	SOFTWARE	GLU B:289 , ASN B:293 , ACP B:401 , HOH B:501	binding site for residue MG B 402
06	AC6	SOFTWARE	ASP C:9 , ASP C:54 , GLU C:56 , BEF C:202 , HOH C:301 , HOH C:303	binding site for residue MG C 201
07	AC7	SOFTWARE	GLN A:193 , ASP C:54 , ILE C:55 , GLU C:56 , THR C:80 , THR C:81 , LYS C:102 , MG C:201 , HOH C:301 , HOH C:303	binding site for residue BEF C 202
08	AC8	SOFTWARE	GLY C:95 , ARG C:121	binding site for residue SO4 C 203
09	AC9	SOFTWARE	ASP D:9 , ASP D:54 , GLU D:56 , BEF D:202 , HOH D:301 , HOH D:302	binding site for residue MG D 201
10	AD1	SOFTWARE	GLN B:193 , ASP D:54 , ILE D:55 , GLU D:56 , THR D:80 , THR D:81 , LYS D:102 , MG D:201 , HOH D:301 , HOH D:302	binding site for residue BEF D 202
11	AD2	SOFTWARE	GLU E:289 , ASN E:293 , LYS E:296 , HIS E:297 , SER E:298 , ASP E:320 , THR E:323 , PHE E:324 , LYS E:325 , GLY E:326 , HIS E:335 , GLY E:336 , LEU E:337 , THR E:359 , MG E:402 , HOH E:502	binding site for residue ACP E 401
12	AD3	SOFTWARE	GLU E:289 , ASN E:293 , ACP E:401 , HOH E:502	binding site for residue MG E 402
13	AD4	SOFTWARE	HOH E:501 , ASP F:9 , ASP F:54 , GLU F:56 , BEF F:202 , HOH F:302	binding site for residue MG F 201
14	AD5	SOFTWARE	GLN E:193 , HOH E:501 , ASP F:54 , ILE F:55 , GLU F:56 , THR F:80 , THR F:81 , LYS F:102 , MG F:201 , HOH F:302	binding site for residue BEF F 202

(no "SS Bond" information available for 5IUN)

(no "Cis Peptide Bond" information available for 5IUN)

(no "SAP(SNP)/Variant" information available for 5IUN)

(no "PROSITE Motif" information available for 5IUN)

(no "Exon" information available for 5IUN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeee.........hhhhhhhhhhhhh..eeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iun A 149 GIIKLRKEIERLEEKLEDANERIAELVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGSKGHGLLGMRERLEFANGSLHIDTENGTKLTMAIPNNS 369
                                   158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       333       343       353       363      
                                                                                                                                                                                                           326|                                     
                                                                                                                                                                                                            332

Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeee...........hhhhhhhhhhhhh..eeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iun B 150 IIKLRKEIERLEEKLEDANERIAELVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEFSKGHGLLGMRERLEFANGSLHIDTENGTKLTMAIPNN 368
                                   159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       332       342       352       362      
                                                                                                                                                                                                           327|                                     
                                                                                                                                                                                                            331

Chain C from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhh.....eeeeee.....hhhhhhhhh...eeee...hhhhhhhhhhhhhh...eehhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iun C   0 SMISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMED 130
                                     9        19        29        39        49        59        69        79        89        99       109       119       129

Chain D from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhh..eeee.......hhhhhhhhh.....eeeeee.....hhhhhhhhh...eeee...hhhhhhhhhhhhhh...eehhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iun D   1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMED 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain E from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeee..............hhhhhhhhhhhhh..eeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iun E 150 IIKLRKEIERLEEKLEDANERIAELVKLEERQRIARDLHDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDTENGTKLTMAIPNNS 369
                                   159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369

Chain F from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhh.....eeeeee.....hhhhhhhhh...eeee...hhhhhhhhhhhhhh...eehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iun F   1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELME 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5IUN)

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Description

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Ligands, Modified Residues, Ions (5, 14)

Sites (14, 14)

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