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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHORYLATED DESKC
 
Authors :  F. Trajtenberg, A. Buschiazzo
Date :  18 Mar 16  (Deposition) - 21 Dec 16  (Release) - 04 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Four-Helix Bundle, Ghl Atpase Domain, Cell Membrane, Kinase, Membrane, Phosphoprotein, Transferase, Transmembrane, Two-Component Regulatory System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Trajtenberg, J. A. Imelio, M. R. Machado, N. Larrieux, M. A. Marti, G. Obal, A. E. Mechaly, A. Buschiazzo
Regulation Of Signaling Directionality Revealed By 3D Snapshots Of A Kinase:Regulator Complex In Action.
Elife V. 5 2016
PubMed-ID: 27938660  |  Reference-DOI: 10.7554/ELIFE.21422

(-) Compounds

Molecule 1 - SENSOR HISTIDINE KINASE DESK
    Chains: A, B
    EC Number: 2.7.13.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE32
    Expression System Strain: TOP10F'
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DESK, YOCF, BSU19190
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1ACP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION
4NEP2Mod. Amino AcidN1-PHOSPHONOHISTIDINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:289 , ASN A:293 , HIS A:297 , SER A:298 , ASP A:320 , THR A:323 , PHE A:324 , LYS A:325 , HIS A:335 , GLY A:336 , LEU A:337 , THR A:359 , MG A:402 , HOH A:501binding site for residue ACP A 401
2AC2SOFTWAREGLU A:289 , ASN A:293 , ACP A:401 , HOH A:501binding site for residue MG A 402
3AC3SOFTWAREGLU B:289 , ASN B:293 , LYS B:296 , HIS B:297 , SER B:298 , ASP B:320 , THR B:323 , PHE B:324 , LYS B:325 , GLY B:326 , GLY B:334 , HIS B:335 , GLY B:336 , LEU B:337 , MG B:402 , HOH B:502binding site for residue ACP B 401
4AC4SOFTWAREGLU B:289 , ASN B:293 , ACP B:401 , HOH B:502binding site for residue MG B 402
5AC5SOFTWAREILE A:183 , ALA A:184 , ILE B:237binding site for residue GOL B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IUM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IUM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IUM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IUM)

(-) Exons   (0, 0)

(no "Exon" information available for 5IUM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeeee.........hhhhhhhhhhhh..eeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ium A 154 RKERERLEEKLEDANERIAELVKLEERQRIARDLhDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEEHGLLGMRERLEFANGSLHIDTENGTKLTMAIPNN 368
                                   163       173       183    |  193       203       213       223       233       243       253       263       273       283       293       303       313       323    || 339       349       359         
                                                            188-NEP                                                                                                                                     328|                                 
                                                                                                                                                                                                         335                                 


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee................hhhhhhhhhhhhh..eee.....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ium B 165 EDANERIAELVKLEERQRIARDLhDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINIKQILEAAIMFIYEEEENISLLNENILSMCLKEAVTNVVKHSQAKRVDIQQLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHITENLTMAIPNNS 369
                                   174       184   |   194       204       214       224       234       244       254     ||265   ||  278       288       298  ||   310       320       330       340       350  || ||364     
                                                 188-NEP                                                                 260|    269|                         301|                                              353| ||        
                                                                                                                          262     273                          304                                               355 ||        
                                                                                                                                                                                                                   357|        
                                                                                                                                                                                                                    361
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IUM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IUM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IUM)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DESK_BACSU | O34757: 3ehf 3ehg 3ehh 3ehj 3gie 3gif 3gig 5iuj 5iuk 5iul 5iun

(-) Related Entries Specified in the PDB File

3gig 5iuj 5iuk 5iul 5ium