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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN OF DESR IN THE INACTIVE STATE
 
Authors :  F. Trajtenberg, N. Larrieux, A. Buschiazzo
Date :  25 Jun 13  (Deposition) - 16 Jul 14  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Response Regulator, Two-Component System, Transcription Factor, Receiver Domain, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Trajtenberg, D. Albanesi, N. Ruetalo, H. Botti, A. E. Mechaly, M. Nieves, P. S. Aguilar, L. Cybulski, N. Larrieux, D. De Mendoza, A. Buschiazzo
Allosteric Activation Of Bacterial Response Regulators: The Role Of The Cognate Histidine Kinase Beyond Phosphorylation
Mbio V. 5 02105 2014
PubMed-ID: 25406381  |  Reference-DOI: 10.1128/MBIO.02105-14

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATORY PROTEIN DESR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE80L
    Expression System Strain: TOP10F'
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DESR, YOCG, BSU19200
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL-1Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL-1Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:121 , ILE A:122 , ALA A:124 , PRO A:125 , HOH A:303 , HOH A:328 , HOH A:335 , HOH A:361 , HOH A:366BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWARESER A:115 , ASN A:118 , LYS A:120 , HOH A:329BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWAREPRO A:58 , PHE A:82 , ARG A:84 , PHE B:82 , ARG B:84 , HOH B:322 , HOH B:348BINDING SITE FOR RESIDUE SO4 B 201
4AC4SOFTWAREVAL A:30 , GLY A:31 , ARG A:46 , MET B:1BINDING SITE FOR RESIDUE ACT B 202

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:51 -A:74
2B:51 -B:74

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LE1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LE1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LE1)

(-) Exons   (0, 0)

(no "Exon" information available for 4LE1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh....eee......hhhhhhhhhhhh..eeeee........hhhhhh......eeeeee.....hhhhhhhhh...eeee...hhhhhhhhhhhhhh...ee.hhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4le1 A   1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMEDLY 132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh..eeeee........hhhhhh......eeeeee.....hhhhhhhhh...eeee...hhhhhhhhhhhhhh...ee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4le1 B   1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMED 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LE1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LE1)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DESR_BACSU | O34723: 4ldz 4le0 4le2 5iuj 5iuk 5iul 5iun

(-) Related Entries Specified in the PDB File

4ldz 4le0 4le2