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(-) Description

Title :  CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS LIPOATE-PROTEIN LIGASE A (LPLA-2) IN COMPLEX WITH 8BO-AMP
 
Authors :  S. J. Hughes, J. H. Song, T. Antoshchenko, H. W. Park
Date :  23 Feb 16  (Deposition) - 15 Mar 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ligase, Protein-Substrate Complex, Lipoate Analog, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Hughes, J. H. Song, T. Antoshchenko, H. W. Park
Crystal Structure Of Enterococcus Faecalis Lipoate-Protein Ligase A (Lpla-2) In Complex With 8Bo-Amp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPOATE--PROTEIN LIGASE
    Chains: A, B
    EC Number: 2.7.7.63
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LPLA-2, EF_2741
    Organism Scientific: ENTEROCOCCUS FAECALIS (STRAIN ATCC 700802 / V583)
    Organism Taxid: 226185
    Strain: ATCC 700802 / V583

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SH52Ligand/Ion5'-O-[(S)-[(8-BROMOOCTANOYL)OXY](HYDROXY)PHOSPHORYL]ADENOSINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SH51Ligand/Ion5'-O-[(S)-[(8-BROMOOCTANOYL)OXY](HYDROXY)PHOSPHORYL]ADENOSINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SH51Ligand/Ion5'-O-[(S)-[(8-BROMOOCTANOYL)OXY](HYDROXY)PHOSPHORYL]ADENOSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:35 , ARG A:68 , GLY A:73 , ALA A:74 , VAL A:75 , TYR A:76 , HIS A:77 , ASN A:81 , LYS A:131 , GLY A:134 , HIS A:147 , THR A:149 , MET A:151 , VAL A:159 , HOH A:501 , HOH A:512 , HOH A:514 , HOH A:541 , HOH A:578 , HOH A:598binding site for residue SH5 A 401
2AC2SOFTWARETYR B:35 , ARG B:68 , GLY B:73 , ALA B:74 , VAL B:75 , TYR B:76 , HIS B:77 , ASN B:81 , ASN B:83 , LYS B:131 , GLY B:134 , HIS B:147 , THR B:149 , MET B:151 , VAL B:159 , PHE B:286 , HOH B:534 , HOH B:559 , HOH B:579 , HOH B:581 , HOH B:587binding site for residue SH5 B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ICH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ICH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ICH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ICH)

(-) Exons   (0, 0)

(no "Exon" information available for 5ICH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....hhhhhhhhhhhhhhhh.....eeeee....eeee....hhhhhhhhhhhhhhh.eeee.......eee...eeeeeeeee.......hhhhhhhhhhhhhhhh.....eee...eeee..eeeeeeeeeee..eeeeeeeee...hhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhh..hhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee.......hhhhhhhhh....hhhhhhhhhhh.hhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ich A  -2 FQGMIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDEHGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDGNSFRDFAKVTQPIIQALHDLGVEGAELKGRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLKRVTNIKPFLSEDKQEMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYRNWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTGVKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY 334
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157      |183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
                                                                                                                                                                                                164|                                                                                                                                                         
                                                                                                                                                                                                 181                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....hhhhhhhhhhhhhhhh.....eeeee....eeee....hhhhhhhhhhhhhhh.eeee.......eee...eeeeeeeee..hhhhhhhhhhhhhhh....eeee...eeee..eeeeeeeeeee..eeeeeeeee...hhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhh..hhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee.......hhhhhhhhh....hhhhhhhhhhh.hhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ich B  -2 FQGMIFVPNENNDPRVNLAIETYLLTEMPLDEPILLFYINEPSIIIGRNQNTIEEINKEYVDEHGIHVVRRLSGGGAVYHDHGNLNFSFIMPDDFAKVTQPIIQALHDLGVEGAELKGRNDLVINDMKFSGNAMYATNGRMFAHGTLMFDSDIDEVVNTLVTNIKPFLSEDKQEMTTEEFRQEILLKIFGVDSIDQVKTYELTDQDWAAINKISEQYYRNWDWNYGKSPAFNLERRHRFPIGSIEMKMNVADGAIQEIKIFGDFFGLGEIKDVEDILTGVKYDKASLEEAIDQIDVKKYFGNIEKEDLLGLIY 334
                                     7        17        27        37        47        57        67        77        87  ||   103       113       123       133       143       153       163|      191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
                                                                                                                       90|                                                               163|                                                                                                                                                        
                                                                                                                        97                                                                182
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ICH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ICH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ICH)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q830N7_ENTFA | Q830N7: 5iby 5icl 5idh

(-) Related Entries Specified in the PDB File

5iby SAME PROTEIN IN COMPLEX WITH A DIFFERENT LIGAND.
5icl
5idh
5iy1