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(-) Description

Title :  BRD9 IN COMPLEX WITH CPD2 (N,N-DIMETHYL-3-(6-METHYL-7-OXO-6,7-DIHYDRO-1H-PYRROLO[2,3-C]PYRIDIN-4-YL)BENZAMIDE)
 
Authors :  J. M. Murray
Date :  18 Feb 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.18
Chains :  Asym./Biol. Unit :  A
Keywords :  Bromodomain Inhibitor Epigenetics Structure-Based Drug Design, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. D. Crawford, V. Tsui, E. M. Flynn, S. Wang, A. M. Taylor, A. Cote, J. E. Audia, M. H. Beresini, D. J. Burdick, R. Cummings, L. A. Dakin, M. Duplessis, A. C. Good, M. C. Hewitt, H. R. Huang, H. Jayaram, J. R. Kiefer, Y. Jiang, J. Murray, C. G. Nasveschuk, E. Pardo, F. Poy, F. A. Romero, Y. Tang, J. Wang, Z. Xu, L. E. Zawadzke, X. Zhu, B. K. Albrecht, S. R. Magnuson, S. Bellon, A. G. Cochran
Diving Into The Water: Inducible Binding Conformations For Brd4, Taf1(2), Brd9, And Cecr2 Bromodomains.
J. Med. Chem. V. 59 5391 2016
PubMed-ID: 27219867  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00264

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 9
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneBRD9, UNQ3040/PRO9856
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
167B1Ligand/IonN,N-DIMETHYL-3-(6-METHYL-7-OXO-6,7-DIHYDRO-1H-PYRROLO[2,3-C]PYRIDIN-4-YL)BENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:44 , PHE A:45 , ILE A:53 , ASN A:100 , TYR A:106 , LYS A:111 , HOH A:305binding site for residue 67B A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I7X)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5i7x A  22 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMS 122
                                    31        41        51        61        71        81        91       101       111       121 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I7X)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD9_HUMAN | Q9H8M23hme 4nqn 4uit 4uiu 4uiv 4uiw 4xy8 4yy4 4yy6 4yyd 4yyg 4yyh 4yyi 4yyj 4yyk 4z6h 4z6i 5e9v 5eu1 5f1h 5f1l 5f25 5f2p 5i40 5i7y 5igm 5ign 5ji8

(-) Related Entries Specified in the PDB File

5i40