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(-) Description

Title :  BROMODOMAIN OF HUMAN BRD9 WITH N-(1,1-DIOXO-1-THIAN-4-YL)-5-ETHYL-4-OXO-7-3-(TRIFLUOROMETHYL)PHENYL-4H,5H-THIENO-3,2-C-PYRIDINE-2-CARBOXIMIDAMIDE
 
Authors :  C. Chung, N. T. Theodoulou, P. Bamborough, P. G. Humphreys
Date :  03 Apr 15  (Deposition) - 22 Apr 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription, Inhibitor, Histone, Epigenetic Reader (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Theodoulou, P. Bamborough, A. J. Bannister, I. Becher, R. A. Bit, K. H. Che, C. Chung, A. Dittmann, G. Drewes, D. H. Drewry, L. Gordon, P. Grandi, M. Leveridge, M. Lindon, A. Michon, J. Molnar, S. C. Robson, N. C. O. Tomkinson, T. Kouzarides, R. K. Prinjha, P. G. Humphreys
The Discovery Of I-Brd9, A Selective Cell Active Chemical Probe For Bromodomain Containing Protein 9 Inhibition.
J. Med. Chem. V. 59 1425 2016
PubMed-ID: 25856009  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00256

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 133-238
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8, HUMAN BRD9

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2H1B1Ligand/IonN'-[1,1-BIS(OXIDANYLIDENE)THIAN-4-YL]-5-ETHYL-4-OXIDANYLIDENE-7-[3-(TRIFLUOROMETHYL)PHENYL]THIENO[3,2-C]PYRIDINE-2-CARBOXIMIDAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:37 , ALA A:46 , PHE A:47 , GLY A:68 , PHE A:118 , HOH A:2037 , HOH A:2039 , HOH A:2136 , HOH A:2223BINDING SITE FOR RESIDUE EDO A1123
2AC2SOFTWAREPHE A:44 , PHE A:45 , VAL A:49 , ILE A:53 , TYR A:99 , ASN A:100 , ARG A:101 , THR A:104 , TYR A:106 , LYS A:111 , HOH A:2112 , HOH A:2206 , HOH A:2224BINDING SITE FOR RESIDUE H1B A1124

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UIW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UIW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UIW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UIW)

(-) Exons   (0, 0)

(no "Exon" information available for 4UIW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 4uiw A  22 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMS 122
                                    31        41        51        61        71        81        91       101       111       121
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UIW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UIW)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  BRD9_HUMAN | Q9H8M2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD9_HUMAN | Q9H8M2: 3hme 4nqn 4uit 4uiu 4uiv 4xy8 4yy4 4yy6 4yyd 4yyg 4yyh 4yyi 4yyj 4yyk 4z6h 4z6i 5e9v 5eu1 5f1h 5f1l 5f25 5f2p 5i40 5i7x 5i7y 5igm 5ign 5ji8

(-) Related Entries Specified in the PDB File

4uit BROMODOMAIN OF HUMAN BRD9 WITH 7-(3,4-DIMETHOXYPHENYL )-2-(4-METHANESULFONYLPIPERAZINE-1-CARBONYL)-5-METHYL- 4H,5H-THIENO-3,2-C-PYRIDIN-4-ONE
4uiu BROMODOMAIN OF HUMAN BRD9 WITH 7-(3,4-DIMETHOXYPHENYL )-N-(1,1-DIOXO-1-THIAN-4-YL)-5-METHYL-4-OXO- 4H,5H-THIENO-3,2-C-PYRIDINE-2-CARBOXAMIDE
4uiv BROMODOMAIN OF HUMAN BRD9 WITH N-(1,1-DIOXO-1- THIAN-4-YL)-5-METHYL-4-OXO-7-3-(TRIFLUOROMETHYL) PHENYL-4H,5H-THIENO-3,2-C-PYRIDINE-2-CARBOXIMIDAMIDE
4uix N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 7-(3,4- DIMETHOXYPHENYL)-N-(1,1-DIOXO-1-THIAN-4-YL)-5- METHYL-4-OXO-4H,5H-THIENO-3,2-C-PYRIDINE-2- CARBOXAMIDE
4uiy N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH N-(1,1- DIOXO-1-THIAN-4-YL)-5-METHYL-4-OXO-7-3-( TRIFLUOROMETHYL)PHENYL-4H,5H-THIENO-3,2-C-PYRIDINE-2 -CARBOXIMIDAMIDE
4uiz N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 7-(3,4- DIMETHOXYPHENYL)-2-(4-METHANESULFONYLPIPERAZINE-1-CARBONYL )-5-METHYL-4H,5H-THIENO-3,2-C-PYRIDIN-4-ONE