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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BRD9 BROMODOMAIN AND HIT 1
 
Authors :  N. Wang, F. Li, H. Bao, J. Li, J. Wu, K. Ruan
Date :  22 Apr 16  (Deposition) - 22 Jun 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym./Biol. Unit :  A
Keywords :  Brd9, Bromodomain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Wang, F. Li, H. Bao, J. Li, J. Wu, K. Ruan
Nmr Fragment Screening Hit Induces Plasticity Of Brd7/9 Bromodomains
Chembiochem V. 17 1456 2016
PubMed-ID: 27194508  |  Reference-DOI: 10.1002/CBIC.201600184

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Fragment: UNP RESIDUES 137-239
    Gene: BRD9, UNQ3040/PRO9856
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
16KT1Ligand/Ion2-AMINO-1,3-BENZOTHIAZOLE-6-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:160 , PHE A:161 , VAL A:165 , ILE A:169 , ASN A:216 , TYR A:222 , HOH A:401binding site for residue 6KT A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JI8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JI8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JI8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JI8)

(-) Exons   (0, 0)

(no "Exon" information available for 5JI8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 5ji8 A 139 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMS 238
                                   148       158       168       178       188       198       208       218       228       238
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JI8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JI8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JI8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ji8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD9_HUMAN | Q9H8M2: 3hme 4nqn 4uit 4uiu 4uiv 4uiw 4xy8 4yy4 4yy6 4yyd 4yyg 4yyh 4yyi 4yyj 4yyk 4z6h 4z6i 5e9v 5eu1 5f1h 5f1l 5f25 5f2p 5i40 5i7x 5i7y 5igm 5ign

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JI8)