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(-) Description

Title :  CRYSTALLOGRAPHIC ANALYSIS OF A COMPLEX BETWEEN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AND ACETYL-PEPSTATIN AT 2.0-ANGSTROMS RESOLUTION
 
Authors :  P. M. D. Fitzgerald, B. M. Mckeever, J. F. Vanmiddlesworth, J. P. Spring
Date :  30 Apr 90  (Deposition) - 15 Oct 91  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Acid Proteinase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Fitzgerald, B. M. Mckeever, J. F. Vanmiddlesworth, J. P. Springer, J. C. Heimbach, C. T. Leu, W. K. Herber, R. A. Dixon, P. L. Darke
Crystallographic Analysis Of A Complex Between Human Immunodeficiency Virus Type 1 Protease And Acetyl-Pepstatin At 2. 0-A Resolution.
J. Biol. Chem. V. 265 14209 1990
PubMed-ID: 2201682
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HIV-1 PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: BACTERIAL
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 2 - ACETYL-*PEPSTATIN
    Chains: C
    Engineered: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CL2Ligand/IonCHLORIDE ION
3STA2Mod. Amino AcidSTATINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:74 , ASN A:88BINDING SITE FOR RESIDUE CL A 343
2AC2SOFTWAREGLY B:273 , THR B:274 , ASN B:288 , HOH B:356BINDING SITE FOR RESIDUE CL B 336
3AC3SOFTWAREARG A:8 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , LYS A:45 , ILE A:47 , GLY A:48 , GLY A:49 , ILE A:50 , VAL A:82 , ILE A:84 , ARG B:208 , LEU B:223 , ASP B:225 , GLY B:227 , ALA B:228 , ASP B:229 , ASP B:230 , LYS B:245 , ILE B:247 , GLY B:248 , GLY B:249 , ILE B:250 , ILE B:284 , HOH B:319 , HOH C:308 , HOH C:311 , HOH C:417BINDING SITE FOR CHAIN C OF ACETYL-*PEPSTATIN

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HVP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HVP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HVP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HVP)

(-) Exons   (0, 0)

(no "Exon" information available for 5HVP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains d5hvpa_ A: Human immunodeficiency virus type 1 protease                                             SCOP domains
               CATH domains 5hvpA00 A:1-99 Acid Proteases                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeee.....eeeee..eeeeeee.....eee..........eeeeeee..eeeeeee...eeeee..eeeee.........eeeehhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 5hvp A   1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF  99
                                    10        20        30        40        50        60        70        80        90         


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains d5hvpb_ B: Human immunodeficiency virus type 1 protease                                             SCOP domains
               CATH domains 5hvpB00 B:201-299 Acid Proteases                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeee.....eeeee..eeeeeee.....eee..........eeeeeee..eeeeeee...eeeee..eeeee.........eeeehhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 5hvp B 201 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 299
                                   210       220       230       240       250       260       270       280       290         


Chain C from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5hvp C   1 xVVxAx   6
                            |  | |
                            1-ACE|
                               4-STA
                                 6-STA
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HVP)

(-) Gene Ontology  (48, 56)

Asymmetric/Biological Unit(hide GO term definitions)

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the following images were kindly provided by the protease and protease inhibitor web server prolysis.
  The structure of HIV-1 protease, an aspartic protease made up of two identical monomers. (PDB code: 5hvp). The two catalytic aspartyl residues, each contributed by one monomer, are shown as ball and sticks (mono).
[ mono JPEG format ]
  The HIV-1 protease-pepstatin complex The two flaps are flexible in the free protease but surround the inhibitor after its binding. (PDB code: 5hvp) (mono).
[ mono JPEG format ]

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  5hvp
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_HV1N5 | P12497: 1a43 1a8o 1afv 1ak4 1aum 1b92 1b9d 1b9f 1baj 1bhl 1bi4 1bis 1biu 1biz 1bl3 1gwp 1hiw 1hyv 1hyz 1itg 1k6y 1m9d 1qs4 1uph 1wjb 1wjd 1wkn 1za9 2b4j 2gol 2gon 2h3f 2h3i 2h3q 2h3v 2h3z 2hmx 2hvp 2itg 2jpr 2jyg 2jyl 2lf4 2lya 2lyb 2m3z 2m8l 2m8n 2m8p 2ont 2pwm 2pwo 2pxr 2x2d 2xde 2xv6 2xxm 3av9 3ava 3avb 3avc 3avf 3avg 3avh 3avi 3avj 3avk 3avl 3avm 3avn 3dik 3dph 3ds0 3ds1 3ds2 3ds3 3ds4 3ds5 3dtj 3gv2 3h47 3h4e 3l3u 3l3v 3lpt 3lpu 3lry 3mge 3nf6 3nf7 3nf8 3nf9 3nfa 3p05 3p0a 3s85 3wne 3wnf 3wng 3wnh 4ah9 4ahr 4ahs 4aht 4ahu 4ahv 4coc 4cop 4dga 4dge 4dmn 4e1m 4e1n 4e91 4e92 4gvm 4gw6 4id1 4ipy 4jlh 4jmu 4lqw 4nx4 4o0j 4o55 4o5b 4phv 4qnb 4wym 4zhr 9hvp
UniProtKB/TrEMBL
        Q9WFL7_9HIV1 | Q9WFL7: 2qmp 3m9f 4ll3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HVP)