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(-) Description

Title :  STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A 38-MER HAIRPIN TEMPLATE-PRIMER DNA APTAMER AND AN ALPHA-CARBOXYPHOSPHONATE INHIBITOR
 
Authors :  K. Das, E. Arnold
Date :  15 Jan 16  (Deposition) - 10 Feb 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,F  (1x)
Biol. Unit 2:  C,D,E  (1x)
Keywords :  Dna Aptamer, 2-O-Methylcytidine, P51, P66, Transferase, Ncrti, Nucleotide Competing, Inhibitor, Transferase-Inhibitor-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. D. Mullins, N. M. Maguire, A. Ford, K. Das, E. Arnold, J. Balzarini, A. R. Maguire
Exploring The Role Of The Alpha-Carboxyphosphonate Moiety I The Hiv-Rt Activity Of Alpha-Carboxy Nucleoside Phosphonates.
Org. Biomol. Chem. V. 14 2454 2016
PubMed-ID: 26813581  |  Reference-DOI: 10.1039/C5OB02507A

(-) Compounds

Molecule 1 - HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT
    Chains: A, C
    EC Number: 2.7.7.49
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GAG-POL
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE BH10)
    Organism Taxid: 11678
    Strain: ISOLATE BH10
    Synonym: PR160GAG-POL
 
Molecule 2 - HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT
    Chains: B, D
    EC Number: 2.7.7.49
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GAG-POL
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE BH10)
    Organism Taxid: 11678
    Strain: ISOLATE BH10
    Synonym: PR160GAG-POL
 
Molecule 3 - DNA (38-MER)
    Chains: E, F
    Engineered: YES
    Expression System: SYNTHETIC CONSTRUCT
    Expression System Taxid: 32630
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB   F
Biological Unit 2 (1x):   CDE 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 23)

Asymmetric Unit (6, 23)
No.NameCountTypeFull Name
164A1Ligand/Ion{[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}PROPANEDIOIC ACID
2GOL11Ligand/IonGLYCEROL
3MG3Ligand/IonMAGNESIUM ION
4OMC4Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
5SO42Ligand/IonSULFATE ION
6SUC2Ligand/IonSUCROSE
Biological Unit 1 (5, 11)
No.NameCountTypeFull Name
164A1Ligand/Ion{[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}PROPANEDIOIC ACID
2GOL6Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4OMC2Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
5SO41Ligand/IonSULFATE ION
6SUC1Ligand/IonSUCROSE
Biological Unit 2 (4, 9)
No.NameCountTypeFull Name
164A-1Ligand/Ion{[(1S,3R)-3-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}PROPANEDIOIC ACID
2GOL5Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4OMC2Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
5SO41Ligand/IonSULFATE ION
6SUC1Ligand/IonSUCROSE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:110 , VAL A:111 , ASP A:185 , 64A A:602binding site for residue MG A 601
02AC2SOFTWAREARG A:72 , VAL A:111 , ASP A:113 , ALA A:114 , TYR A:115 , ASP A:185 , MG A:601 , DA F:0 , DG F:33binding site for residue 64A A 602
03AC3SOFTWAREASP A:443 , ASP A:549 , HOH A:701binding site for residue MG A 603
04AC4SOFTWAREGLY A:333 , GLN A:334binding site for residue SO4 A 604
05AC5SOFTWAREGLN A:507 , TYR A:532 , LEU A:533 , ALA A:534 , LYS B:259 , LEU B:422binding site for residue GOL A 605
06AC6SOFTWAREVAL B:21 , ASP B:76 , ARG B:78 , GLU B:79 , LYS B:82 , LYS B:395 , GLU B:399 , GLU B:413 , TRP B:414 , GOL B:2003binding site for residue SUC B 2001
07AC7SOFTWAREGLY B:316 , VAL B:317 , TYR B:318 , LYS B:323 , GLN B:343binding site for residue GOL B 2002
08AC8SOFTWARETRP B:24 , GLU B:399 , TRP B:402 , TRP B:414 , SUC B:2001binding site for residue GOL B 2003
09AC9SOFTWARELEU A:92 , GLN B:23 , TRP B:24 , PRO B:25 , ASN B:137binding site for residue GOL B 2004
10AD1SOFTWARETHR A:369 , GLN A:373 , ALA A:408 , THR A:409 , GLN B:394 , THR B:397binding site for residue GOL B 2005
11AD2SOFTWARELYS B:64 , GLU B:404 , TRP B:406 , GLN B:407binding site for residue GOL B 2006
12AD3SOFTWAREASP C:443 , ASP C:549 , HOH C:701 , HOH C:702 , HOH C:703binding site for residue MG C 601
13AD4SOFTWARELYS C:331 , GLN C:334 , LYS C:512binding site for residue SO4 C 602
14AD5SOFTWAREASN C:265 , TRP C:266 , DC E:5 , DG E:30binding site for residue GOL C 603
15AD6SOFTWAREVAL D:21 , ASP D:76 , ARG D:78 , GLU D:79 , LYS D:82 , LYS D:395 , GLU D:399 , GLU D:413 , TRP D:414 , GOL D:505binding site for residue SUC D 501
16AD7SOFTWARELYS C:366 , GLU C:370 , GLN C:407 , ALA C:408 , THR C:409 , GLN D:394 , THR D:397binding site for residue GOL D 502
17AD8SOFTWAREGLU D:328 , GLN D:340 , PHE D:346 , ASN D:348 , TRP D:426binding site for residue GOL D 503
18AD9SOFTWARELEU C:92 , VAL C:381 , GLN D:23 , ASN D:137binding site for residue GOL D 504
19AE1SOFTWARETRP D:24 , ARG D:78 , GLU D:399 , TRP D:402 , SUC D:501binding site for residue GOL D 505
20AE2SOFTWAREASN C:81 , GLU C:89 , GLY C:152 , LYS C:154 , PRO C:157 , DA E:0 , DC E:3 , DG E:32 , DG E:33binding site for Di-nucleotide DC E 1 and OMC E 2
21AE3SOFTWAREGLU C:89 , GLN C:91 , ILE C:94 , PRO C:157 , DC E:1 , OMC E:4 , DG E:31 , DG E:32 , DG E:33binding site for Di-nucleotide OMC E 2 and DC E 3
22AE4SOFTWAREGLU C:89 , GLN C:91 , LEU C:92 , ILE C:94 , LYS D:22 , OMC E:2 , DC E:5 , DG E:30 , DG E:31 , DG E:32binding site for Di-nucleotide DC E 3 and OMC E 4
23AE5SOFTWARELEU C:92 , ILE C:94 , GOL C:603 , LYS D:22 , DC E:3 , DC E:6 , DG E:29 , DG E:30 , DG E:31binding site for Di-nucleotide OMC E 4 and DC E 5
24AE6SOFTWAREARG A:78 , ASN A:81 , GLU A:89 , GLY A:152 , LYS A:154 , PRO A:157 , GLN A:161 , MET A:184 , DA F:0 , DC F:3 , DG F:32 , DG F:33binding site for Di-nucleotide DC F 1 and OMC F 2
25AE7SOFTWAREGLU A:89 , GLN A:91 , ILE A:94 , LYS A:154 , PRO A:157 , GLN A:161 , MET A:184 , DC F:1 , OMC F:4 , DG F:31 , DG F:32 , DG F:33binding site for Di-nucleotide OMC F 2 and DC F 3
26AE8SOFTWAREGLU A:89 , GLN A:91 , LEU A:92 , ILE A:94 , LYS B:22 , OMC F:2 , DC F:5 , DG F:30 , DG F:31 , DG F:32binding site for Di-nucleotide DC F 3 and OMC F 4
27AE9SOFTWARELEU A:92 , ILE A:94 , LYS B:22 , DC F:3 , DC F:6 , DG F:29 , DG F:30 , DG F:31binding site for Di-nucleotide OMC F 4 and DC F 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLF)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:225 -Pro A:226
2Pro A:420 -Pro A:421
3Pro C:225 -Pro C:226
4Pro C:420 -Pro C:421

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLF)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:554
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................hhhhhhhhhhhhhhhhhhh.ee...........eeeee......eeeee.hhhhhhhh...........hhhhh....eeeeee...hhhhh...hhhhhhhheee.........eeeee........hhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeee..hhhhhhhhhhhhhhhhhhh....hhhhh.....eee..eee....eee...........hhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhh.............eeeeee.....eeeeee.....eeeeeee......eehhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhh........eee.....................eeeeeeeee.....eeeeeeee....eeeeeee..hhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhh...ee.hhhhhhhhhhhhhh.eeeeee........hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlf A   1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550    


Chain B from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhhhh..eee..........eeee........eeee.hhhhhhhh.hhhhhh.......hhhhh.eeeeee.hhhhhhh..hhhhhhhhheee.hhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeee..eeeeee..hhhhhhhhhhhhhhhhhhhhhh.......eeehhhhh.............hhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhh.............eeeeeeee..eeeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh........eee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlf B   4 PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ 428
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213  ||   232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422      
                                                                                                                                                                                                                                              216|                                                                                                                                                                                                          
                                                                                                                                                                                                                                               226                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................hhhhhhhhhhhhhhhh.eee..........ee............ee.hhhhhhhh...........hhhhh....eeeeee...hhhhh..hhhhhhhhh..............eee........hhhhhhhhhhhhhhhhhhhh....eeeee..eeeeee..hhhhhhhhhhhhhhhhhh.....hhhhh.....eee..eee....eee...........hhhhhhhhhhhhhhhh.......hhhhhhhh............hhhhhhhhhhhhhhhhh.............eeeeee.....eeeeeeee..eeeeeeee......eehhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh........eee.....................eeeeeeeee.....eeeeeeee....eeeeeee..hhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhh...ee.hhhhhhhhhhhhhh.eeeeee......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlf C   1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS 553
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   


Chain D from PDB  Type:PROTEIN  Length:410
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhhh..eee..........eeeee......eeeee.hhhhhhhh..............hhhhh.eeeeee.hhhhhhh..hhhhhhhhheee.hhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeee..eeeeee..hhhhhhhhhhhhhhhhhhhh......eeehhhhh.............hhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhhhh.............eeeeeeee..eeeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh........eeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlf D   6 ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 427
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427
                                                                                                                                                                                                                                         213|                                                                                                                                                                                                         
                                                                                                                                                                                                                                          226                                                                                                                                                                                                         


Chain E from PDB  Type:DNA/RNA  Length:35
                                                                   
                 5hlf E  -1 TACcCcCCCTTCGGTGCTTTGCACCGAAGGGGGGG  33
                               | |   8        18        28     
                               2-OMC                           
                                 4-OMC                         


Chain F from PDB  Type:DNA/RNA  Length:35
                                                                   
                 5hlf F  -1 TACcCcCCCTTCGGTGCTTTGCACCGAAGGGGGGG  33
                               | |   8        18        28     
                               2-OMC                           
                                 4-OMC
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLF)

(-) Gene Ontology  (45, 45)

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  5hlf
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  POL_HV1B1 | P03366
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.7.49
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Age Related Information: GenAge

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    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  POL_HV1B1 | P03366
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_HV1B1 | P03366: 1a9m 1ajv 1ajx 1axa 1bqm 1bqn 1d4h 1d4i 1d4j 1dlo 1dw6 1ebk 1ebw 1eby 1ebz 1ec0 1ec1 1ec2 1ec3 1eet 1g35 1gnm 1gnn 1gno 1har 1hbv 1hef 1heg 1hih 1hmv 1hni 1hnv 1hos 1hps 1hpz 1hqe 1hqu 1hrh 1hte 1htf 1htg 1hvi 1hvk 1hvp 1hvu 1hys 1ikv 1ikw 1ikx 1iky 1j5o 1kjh 1mer 1mes 1met 1meu 1n5y 1n6q 1npa 1npv 1npw 1qe1 1qmc 1r0a 1rdh 1rtd 1rvl 1rvm 1rvn 1rvo 1rvp 1rvq 1rvr 1s6p 1s6q 1s9e 1s9g 1sbg 1suq 1sv5 1t03 1t05 1t7k 1tv6 1tvr 1uwb 1w5v 1w5w 1w5x 1w5y 1yt9 1zp8 1zpa 1zsf 1zsr 2aqu 2b5j 2b6a 2ban 2bbb 2be2 2exf 2fde 2g69 2hb3 2hmi 2hnz 2hs1 2hs2 2i4d 2i4u 2i4v 2i4w 2i4x 2i5j 2iaj 2ic3 2idw 2ien 2ieo 2jzw 2l45 2l46 2l4l 2uxz 2uy0 2vg5 2vg6 2vg7 2wkz 2wl0 2x4u 2xye 2xyf 2ykm 2ykn 2zd1 2ze2 3avi 3bgr 3dlk 3gga 3ggv 3ggx 3hvt 3ig1 3irx 3is9 3isn 3ith 3jsm 3jyt 3k2p 3k4v 3kle 3klf 3klg 3klh 3kli 3ndt 3nu3 3nu4 3nu5 3nu6 3nu9 3nuj 3nuo 3ok9 3psu 3qaa 3qlh 3qo9 3tkg 3tkw 3tl9 3tlh 3v4i 3v6d 3v81 3zps 3zpt 3zpu 4coe 4cp7 4cpq 4cpr 4cps 4cpt 4cpu 4cpw 4cpx 4dg1 4g1q 4g8g 4g8i 4g9d 4g9f 4h4m 4h4o 4i2p 4i2q 4icl 4id5 4idk 4ifv 4ify 4ig0 4ig3 4kfb 4kko 4ko0 4lsl 4lsn 4mfb 4o44 4o4g 4ojr 4pqu 4puo 4pwd 4q0b 4qag 4r5p 4rw4 4rw6 4rw7 4rw8 4rw9 4u8w 4we1 4ye3 4yhq 4zip 4zls 5agz 5ah6 5ah7 5ah8 5ah9 5aha 5ahb 5ahc 5bry 5bs4 5c24 5c25 5c42 5cym 5cyq 5d3g 5fdl 5hbm 5hp1 5hro 5i3u 5i42 5j1e 5jfp 5jfu 5jg1 5t6z 5t70 5tep 5ter 5tuq 5tw3 5txl 5txm 5txn 5txo 5txp

(-) Related Entries Specified in the PDB File

3v4i 4r5p 5d3g 5hp1