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(-) Description

Title :  REACTION COORDINATE MOTION IN AN SNAR REACTION CATALYZED BY GLUTATHIONE TRANSFERASE
 
Authors :  X. Ji, R. N. Armstrong, G. L. Gilliland
Date :  20 Jul 93  (Deposition) - 31 Oct 93  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, R. N. Armstrong, G. L. Gilliland
Snapshots Along The Reaction Coordinate Of An Snar Reaction Catalyzed By Glutathione Transferase.
Biochemistry V. 32 12949 1993
PubMed-ID: 8241147  |  Reference-DOI: 10.1021/BI00211A001
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Organism Common: BLACK RAT
    Organism Scientific: RATTUS RATTUS
    Organism Taxid: 10117

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GDN2Ligand/IonGLUTATHIONE S-(2,4 DINITROBENZENE)
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:7 , LEU A:12 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , PRO A:60 , GLN A:71 , SER A:72 , MET A:108 , ASP B:105 , HOH A:222 , HOH A:223 , HOH A:264 , HOH A:311 , HOH A:343 , HOH A:349 , HOH A:355 , HOH A:375 , HOH B:325 , HOH A:397 , HOH A:412BINDING SITE FOR RESIDUE GDN A 219
2AC2SOFTWAREASP A:105 , TRP B:7 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , GLN B:71 , SER B:72 , HOH A:220 , HOH B:220 , HOH A:233 , HOH B:271 , HOH B:312 , HOH B:313 , HOH B:329BINDING SITE FOR RESIDUE GDN B 218
3AC3SOFTWAREALA A:33 , MET A:34 , LYS A:210 , HOH A:306 , HOH A:338BINDING SITE FOR RESIDUE SO4 A 218

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GST)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:37 -Pro A:38
2Leu A:59 -Pro A:60
3Thr A:205 -Pro A:206
4Ala B:37 -Pro B:38
5Leu B:59 -Pro B:60
6Thr B:205 -Pro B:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GST)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GST)

(-) Exons   (0, 0)

(no "Exon" information available for 5GST)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d5gsta2 A:1-84 Class mu GST                                                         d5gsta1 A:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 5gstA01 A:1-85,A:191-217 Glutaredoxin                                                5gstA02 A:86-190  [code=1.20.1050.10, no name defined]                                                   5gstA01 A:1-85,A:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..............eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gst A   1 PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d5gstb2 B:1-84 Class mu GST                                                         d5gstb1 B:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 5gstB01 B:1-85,B:191-217 Glutaredoxin                                                5gstB02 B:86-190  [code=1.20.1050.10, no name defined]                                                   5gstB01 B:1-85,B:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhhhhh...........eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gst B   1 PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GST)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

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UniProtKB/Swiss-Prot
        GSTM1_RAT | P04905: 1gsb 1gsc 1mtc 2gst 3fyg 3gst 4gst 5fwg 6gst 6gsu 6gsv 6gsw 6gsx 6gsy

(-) Related Entries Specified in the PDB File

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