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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX OF TLR3 AND BI-SPECIFIC DIABODY
 
Authors :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, H. Lee, J. O. Lee
Date :  13 Aug 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.28
Chains :  Asym. Unit :  A,B,C,D,E,F,H,L,X,Y
Biol. Unit 1:  A,C,D,X,Y  (1x)
Biol. Unit 2:  B,E,F,H,L  (1x)
Keywords :  Diabody, Antibody Fragment, Complex, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, S. C. Kim, H. Lee, M. S. Jin, J. O. Lee
Crystal Structure Of Mono- And Bi-Specific Diabodies And Reduction Of Their Structural Flexibility By Introduction O Disulfide Bridges At The Fv Interface.
Sci Rep V. 6 34515 2016
PubMed-ID: 27682821  |  Reference-DOI: 10.1038/SREP34515

(-) Compounds

Molecule 1 - TOLL-LIKE RECEPTOR 3
    Chains: A, B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Fragment: ECTODOMAIN (UNP RESIDUES 27-697)
    Gene: TLR3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - LIGHT CHAIN (ANTI-TLR3)
    Chains: C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - HEAVY CHAIN (ANTI-TLR3)
    Chains: D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - HEAVY CHAIN (ANTI-LID)
    Chains: X, H
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 5 - LIGHT CHAIN (ANTI-LID)
    Chains: Y, L
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFHLXY
Biological Unit 1 (1x): A CD    XY
Biological Unit 2 (1x):  B  EFHL  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 40)

Asymmetric Unit (3, 40)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN2Ligand/IonALPHA-D-MANNOSE
3NAG34Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG17Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 20)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG17Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:33 , ASN A:52binding site for residue NAG A 801
02AC2SOFTWAREGLN A:44 , VAL A:45 , ASN A:70binding site for residue NAG A 802
03AC3SOFTWARETHR A:78 , MET A:100 , ASN A:124 , NAG A:804binding site for residue NAG A 803
04AC4SOFTWARENAG A:803binding site for residue NAG A 804
05AC5SOFTWAREASN A:247binding site for residue NAG A 805
06AC6SOFTWAREASN A:252 , MET A:278binding site for residue NAG A 806
07AC7SOFTWAREASN A:265 , NAG A:808binding site for residue NAG A 807
08AC8SOFTWARENAG A:807binding site for residue NAG A 808
09AC9SOFTWAREASN A:275binding site for residue NAG A 809
10AD1SOFTWAREASN A:291 , PHE A:314 , HIS A:316 , NAG A:811binding site for residue NAG A 810
11AD2SOFTWARENAG A:810binding site for residue NAG A 811
12AD3SOFTWAREASN A:398 , GLU A:399 , NAG A:813binding site for residue NAG A 812
13AD4SOFTWARENAG A:812binding site for residue NAG A 813
14AD5SOFTWAREGLU A:363 , SER A:387 , ASN A:413 , ASP A:437 , TYR A:462 , NAG A:815binding site for residue NAG A 814
15AD6SOFTWARELYS A:416 , NAG A:814 , BMA A:816binding site for residue NAG A 815
16AD7SOFTWARENAG A:815 , MAN B:701binding site for residue BMA A 816
17AD8SOFTWARESER A:481 , ASN A:507 , LYS A:531 , NAG A:818binding site for residue NAG A 817
18AD9SOFTWARENAG A:817 , BMA A:819binding site for residue NAG A 818
19AE1SOFTWARENAG A:818binding site for residue BMA A 819
20AE2SOFTWAREBMA B:717binding site for residue MAN A 820
21AE3SOFTWAREBMA A:816binding site for residue MAN B 701
22AE4SOFTWAREGLU B:33 , ASN B:52binding site for residue NAG B 702
23AE5SOFTWAREGLN B:44 , ASN B:70binding site for residue NAG B 703
24AE6SOFTWARETHR B:78 , MET B:100 , ASN B:124 , NAG B:705binding site for residue NAG B 704
25AE7SOFTWARENAG B:704binding site for residue NAG B 705
26AE8SOFTWAREASN B:247 , TRP B:273binding site for residue NAG B 706
27AE9SOFTWAREASN B:252 , MET B:278binding site for residue NAG B 707
28AF1SOFTWAREASN B:265 , NAG B:709binding site for residue NAG B 708
29AF2SOFTWARENAG B:708binding site for residue NAG B 709
30AF3SOFTWAREASN B:275binding site for residue NAG B 710
31AF4SOFTWAREASN B:291 , HIS B:316 , NAG B:712binding site for residue NAG B 711
32AF5SOFTWARENAG B:711binding site for residue NAG B 712
33AF6SOFTWAREASN B:398 , GLU B:399 , NAG B:714binding site for residue NAG B 713
34AF7SOFTWARENAG B:713binding site for residue NAG B 714
35AF8SOFTWAREGLU B:363 , SER B:387 , ASN B:413 , THR B:415 , ASP B:437 , NAG B:716binding site for residue NAG B 715
36AF9SOFTWARELYS B:416 , NAG B:715 , BMA B:717binding site for residue NAG B 716
37AG1SOFTWAREMAN A:820 , NAG B:716binding site for residue BMA B 717
38AG2SOFTWARESER B:481 , ASN B:507 , NAG B:719binding site for residue NAG B 718
39AG3SOFTWARENAG B:718 , BMA B:720binding site for residue NAG B 719
40AG4SOFTWARENAG B:719binding site for residue BMA B 720

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:95 -A:122
2A:649 -A:677
3B:95 -B:122
4B:649 -B:677
5C:22 -C:87
6D:22 -D:99
7E:22 -E:87
8F:22 -F:99
9H:22 -H:96
10L:23 -L:88
11X:22 -X:96
12Y:23 -Y:88

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Thr A:679 -Pro A:680
2Tyr D:104 -Pro D:105
3Tyr F:104 -Pro F:105
4Leu Y:94 -Pro Y:95
5Leu L:94 -Pro L:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GS0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GS0)

(-) Exons   (0, 0)

(no "Exon" information available for 5GS0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:663
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..................eee.........hhhhhh......eee..........hhhhhh.....eee.....................eee.....................eee.....................eee.........hhhhhhhhh..ee.eee..................ee.eee......hhhhhhhhhhhhh.....eee.......ee.....hhhhhh...eee.......ee............eee.........hhhhhh......eee..............................eee.....................eee.........ee..hhhhhhh.....eee.......ee............eee......eeee............eee.....eeee............eee.......................eee.....................eee......hhhhh..................eee.....................eee.....................eee.........hhhhhhhhhh...eee.....ee.hhhhhhhhhhhhhhh.....hhhhhh.eee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 A  29 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 691
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688   


Chain B from PDB  Type:PROTEIN  Length:663
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eee..................eee.........hhhhhh......eee..........hhhhhhh....eee.....................eee.....................eee.....................eee.........hhhhhhhhh..ee.eee..................ee.eee......hhhhhhhhhhhh......eee.......ee..hhhhhhhhh...eee.......ee............eee.......eehhhhhh......eee................ee............eee.....................eee.........ee....hhhhh.....eee.......ee............eee......eeee............eee.....eeee.hhhh.......eee.......................eee.....................eee......hhhhh..................eee.....................eee.....................eee.........hhhhhhhhhh...eee........hhhhhhhhhhhhhhh.....hhhhhh....hhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 B  29 TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 691
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688   


Chain C from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....eeeeee..hhhhh..eeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeee.......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 C   1 DIVLTQPPSVSVAPGQTARISCSGDNIGSYYVHWYQQKPGQAPVLVIYEDSERPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCSSYDDPNFQVFGGGTKLTVK 107
                                    10        20        30        40        50        60        70        80        90       100       


Chain D from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee........eeeeeeee.....eeeeeeeee...eeeee..........eee....eeeeee...hhhhheeeeeeeee....eeeee...eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 D   1 QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWGWIRQSPGRGLEWLGIIQKRSKWYNNYAVKVKSKITINPDTSKNQFSLQLSSVTPEDTAVYYCARYSYPFYSIDYWGQGTLVTVSS 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain E from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.....eeeeee..hhhhh..eeeee......eeee.............eee.....eeeeee........eeeeeee.......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 E   1 DIVLTQPPSVSVAPGQTARISCSGDNIGSYYVHWYQQKPGQAPVLVIYEDSERPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCSSYDDPNFQVFGGGTKLTVK 107
                                    10        20        30        40        50        60        70        80        90       100       


Chain F from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee........eeeeeeee.....eeeeeeeee...eeeee.......eeeeee....eeeeee...hhhhheeeeeeeee....eeeee...eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 F   1 QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWGWIRQSPGRGLEWLGIIQKRSKWYNNYAVKVKSKITINPDTSKNQFSLQLSSVTPEDTAVYYCARYSYPFYSIDYWGQGTLVTVSS 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain H from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..........eeeeeee.........eeeeeee.....eeeeeeee.....ee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee...eeee....ee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 H   1 QVQLKESGPGLVRPSQSLSLTCSVTGYSITSGYYWNWIRQFPGNKLEWMGYISYDGSNNYNPSLKGRISITRDTSKNQFFLKLNSVTTDDTATYYCARAYIGFAYWGQGTLVTVSS 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain L from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee................eeee.......eeeeee.....eeeeee...ee.......eeeeee..eeeeee.........eeeeee......ee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 L   1 DIQLTQSTSSLPASLGDRVTISCRAGQDISNHLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGSKLE 105
                                    10        20        30        40        50        60        70        80        90       100     


Chain X from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee........eeeeeeeee.........eeeeeee.....eeeeeeee.......hhhhh..eeeeee....eeeeeeeeehhhhheeeeeeee...eeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5gs0 X   1 QVQLKESGPGLVRPSQSLSLTCSVTGYSITSGYYWNWIRQFPGNKLEWMGYISYDGSNNYNPSLKGRISITRDTSKNQFFLKLNSVTTDDTATYYCARAYIGFAYWGQGTLVTV 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain Y from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..........eeeeeee.......eeeeee.....eeeeee...ee.......eeee....eeeeee.........eeeeee................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5gs0 Y   1 DIQLTQSTSSLPASLGDRVTISCRAGQDISNHLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPWTFGGGSKLEIK 107
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GS0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GS0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GS0)

(-) Gene Ontology  (78, 78)

Asymmetric Unit(hide GO term definitions)

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        TLR3_HUMAN | O15455: 1ziw 2a0z 2mk9 2mka 3ulu 3ulv

(-) Related Entries Specified in the PDB File

5gru 5grv 5grw 5grx 5gry 5grz 5gs1 5gs2 5gs3