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(-) Description

Title :  CRYSTAL STRUCTURE OF HOMO-SPECIFIC DIABODY
 
Authors :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, H. Lee, J. O. Lee
Date :  12 Aug 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  K,L
Keywords :  Diabody, Antibody Fragment, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, S. C. Kim, H. Lee, M. S. Jin, J. O. Lee
Crystal Structure Of Mono- And Bi-Specific Diabodies And Reduction Of Their Structural Flexibility By Introduction O Disulfide Bridges At The Fv Interface.
Sci Rep V. 6 34515 2016
PubMed-ID: 27682821  |  Reference-DOI: 10.1038/SREP34515

(-) Compounds

Molecule 1 - HOMO-SPECIFIC DIABODY HEAVY CHAIN
    Chains: L
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - HOMO-SPECIFIC DIABODY LIGHT CHAIN
    Chains: K
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GRV)

(-) Sites  (0, 0)

(no "Site" information available for 5GRV)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1K:146 -K:212
2L:21 -L:95

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser L:53 -Gly L:54
2Gly L:54 -Ser L:55
3Ser K:130 -Pro K:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GRV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GRV)

(-) Exons   (0, 0)

(no "Exon" information available for 5GRV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain K from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..ee.......eeeeeee...hhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 5grv K 124 DIVLTQSPATLSLSPGERATLSCRASQSVSSNYLAWYQQKPGQAPRLLIYDSSSRATGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCHQYSDISPTFGQGTKVE 229
                                   133       143       153       163       173       183       193       203       213       223      


Chain L from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeeehhhhh...ee...eeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5grv L   1 VQLVESGGGLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWYSGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLIAEDTAVYYCARFAGGWGAYDVWGQGTLVTVSSGGGGS 123
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GRV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GRV)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Gly L:54 - Ser L:55   [ RasMol ]  
    Ser K:130 - Pro K:131   [ RasMol ]  
    Ser L:53 - Gly L:54   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5gru 5grw 5grx 5gry 5grz 5gs0 5gs1 5gs2 5gs3