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(-) Description

Title :  CRYSTAL STRUCTURE OF DISULFIDE-BONDED DIABODY
 
Authors :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, H. Lee, J. O. Lee
Date :  12 Aug 16  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  G,H
Keywords :  Diabody, Antibody Fragment, Disulfide Bonded, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Kim, D. H. Song, S. J. Youn, J. W. Kim, G. Cho, S. C. Kim, H. Lee, M. S. Jin, J. O. Lee
Crystal Structure Of Mono- And Bi-Specific Diabodies And Reduction Of Their Structural Flexibility By Introduction O Disulfide Bridges At The Fv Interface.
Sci Rep V. 6 34515 2016
PubMed-ID: 27682821  |  Reference-DOI: 10.1038/SREP34515

(-) Compounds

Molecule 1 - DIABODY PROTEIN
    Chains: G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GRX)

(-) Sites  (0, 0)

(no "Site" information available for 5GRX)

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1G:22 -G:96
2G:89 -H:89
3G:223 -G:289
4H:22 -H:96
5H:223 -H:289

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser G:207 -Pro G:208
2Ser H:207 -Pro H:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GRX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GRX)

(-) Exons   (0, 0)

(no "Exon" information available for 5GRX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain G from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeee.hhhh.eeee...eeeee.........eeee..eee......eeeeeee...hhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5grx G   2 VQLVESGGGLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWYSGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLTACDTAVYYCARFAGGWGAYDVWGQGTLVTVSSGGGGDIVLTQSPATLSLSPGERATLSCRASQSVSSNYLAWYQQKPGQAPRLLIYDSSSRATGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCHQYSDISPTFGQGTKVEI 307
                                    11        21        31        41        51        61        71        81        91       101       111       121 ||    208       218       228       238       248       258       268       278       288       298         
                                                                                                                                                   123|                                                                                                          
                                                                                                                                                    201                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeee.hhhh.eeee...eeeee..........eeee..eeee.....eeeeeee...hhhh.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5grx H   2 VQLVESGGGLVQPGGSLRLSCAASGFTFRNSAMHWVRQAPGKGLEWVSSIWYSGSNTYYADSVKGRFTISRDNSKNTLYLQMNSLTACDTAVYYCARFAGGWGAYDVWGQGTLVTVSSGGGGSDIVLTQSPATLSLSPGERATLSCRASQSVSSNYLAWYQQKPGQAPRLLIYDSSSRATGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCHQYSDISPTFGQGTKVEIK 308
                                    11        21        31        41        51        61        71        81        91       101       111       121  ||   207       217       227       237       247       257       267       277       287       297       307 
                                                                                                                                                    124|                                                                                                           
                                                                                                                                                     201
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GRX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GRX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GRX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5GRX)

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  Sites
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  Cis Peptide Bonds
    Ser G:207 - Pro G:208   [ RasMol ]  
    Ser H:207 - Pro H:208   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5gru 5grv 5grw 5gry 5grz 5gs0 5gs1 5gs2 5gs3