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Title :   CRYSTAL STRUCTURE OF ZIKV NS5 METHYLTRANSFERASE IN COMPLEX WITH GTP AND SAH

Authors :   C. Zhang, T. Jin

Date :   30 Jul 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Methyltransferase Gtp Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Zhang, T. Feng, J. Cheng, Y. Li, X. Yin, W. Zeng, X. Jin, Y. Li, F. Guo, T. Jin
Structure Of The Ns5 Methyltransferase From Zika Virus And Implications In Inhibitor Design
Biochem. Biophys. Res. Commun. 2016
PubMed-ID: 27866982 | Reference-DOI: 10.1016/J.BBRC.2016.11.098

Molecule 1 - RNA-DIRECTED RNA POLYMERASE NS5
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 2524-2785
	Organism Common	:	ZIKV
	Organism Scientific	:	ZIKA VIRUS (STRAIN MR 766)
	Organism Taxid	:	64320
	Strain	:	MR 766
	Synonym	:	NS5 METHYLTRANSFERASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 16)

No.	Name	Count	Type	Full Name
1	GTP	4	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	PO4	5	Ligand/Ion	PHOSPHATE ION
3	POP	1	Ligand/Ion	PYROPHOSPHATE 2-
4	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
5	SIN	3	Ligand/Ion	SUCCINIC ACID

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	PO4	2	Ligand/Ion	PHOSPHATE ION
3	POP	-1	Ligand/Ion	PYROPHOSPHATE 2-
4	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
5	SIN	-1	Ligand/Ion	SUCCINIC ACID

Biological Unit 2 (4, 6)

No.	Name	Count	Type	Full Name
1	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	PO4	2	Ligand/Ion	PHOSPHATE ION
3	POP	-1	Ligand/Ion	PYROPHOSPHATE 2-
4	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
5	SIN	2	Ligand/Ion	SUCCINIC ACID

Biological Unit 3 (5, 6)

No.	Name	Count	Type	Full Name
1	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	PO4	1	Ligand/Ion	PHOSPHATE ION
3	POP	1	Ligand/Ion	PYROPHOSPHATE 2-
4	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
5	SIN	1	Ligand/Ion	SUCCINIC ACID

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:13 , LEU A:16 , ASN A:17 , MET A:19 , PHE A:24 , SER A:150 , SER A:151 , SER A:152 , ARG A:213 , SER A:215 , HOH A:440 , HOH A:451	binding site for residue GTP A 301
02	AC2	SOFTWARE	SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:83 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , GLU A:111 , VAL A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , HOH A:403	binding site for residue SAH A 302
03	AC3	SOFTWARE	ARG A:37 , ARG A:41 , SER A:56 , ARG A:57 , ARG A:84	binding site for residue PO4 A 303
04	AC4	SOFTWARE	LYS A:29 , ARG A:41 , ARG A:57 , ARG A:213	binding site for residue PO4 A 304
05	AC5	SOFTWARE	LYS B:13 , LEU B:16 , ASN B:17 , MET B:19 , PHE B:24 , LYS B:28 , SER B:150 , SER B:151 , SER B:152 , ARG B:213 , SER B:215 , HOH B:415 , HOH B:425	binding site for residue GTP B 301
06	AC6	SOFTWARE	SER B:56 , GLY B:58 , GLY B:81 , CYS B:82 , GLY B:83 , GLY B:86 , TRP B:87 , LYS B:105 , HIS B:110 , GLU B:111 , VAL B:130 , ASP B:131 , VAL B:132 , PHE B:133 , ASP B:146 , HOH B:416	binding site for residue SAH B 302
07	AC7	SOFTWARE	ARG A:197 , GLN B:72 , TYR B:74 , LYS B:96 , SIN B:304	binding site for residue SIN B 303
08	AC8	SOFTWARE	ARG A:201 , LYS B:96 , SIN B:303	binding site for residue SIN B 304
09	AC9	SOFTWARE	ARG B:37 , ARG B:41 , ARG B:57 , ARG B:84	binding site for residue PO4 B 306
10	AD1	SOFTWARE	LYS C:13 , LEU C:16 , ASN C:17 , MET C:19 , PHE C:24 , LYS C:28 , SER C:151 , SER C:152 , SER C:215	binding site for residue GTP C 301
11	AD2	SOFTWARE	GLU C:149 , SER C:151 , SER C:152 , SER C:153 , GLU C:155 , VAL C:156 , ARG C:160 , ARG C:249	binding site for residue GTP C 302
12	AD3	SOFTWARE	SER C:56 , GLY C:58 , GLY C:81 , CYS C:82 , GLY C:86 , TRP C:87 , THR C:104 , LYS C:105 , HIS C:110 , VAL C:130 , ASP C:131 , VAL C:132 , PHE C:133 , ASP C:146 , HOH C:408 , HOH C:409	binding site for residue SAH C 303
13	AD4	SOFTWARE	GLN C:72 , TYR C:74 , LYS C:96	binding site for residue SIN C 304
14	AD5	SOFTWARE	ARG C:41 , SER C:56 , ARG C:57 , ARG C:84	binding site for residue POP C 305
15	AD6	SOFTWARE	LYS C:29 , ARG C:41 , ARG C:57 , ARG C:213	binding site for residue PO4 C 306
16	AD7	SOFTWARE	TYR B:27 , LYS B:28 , SER B:30 , GLY B:31 , ILE B:32 , GLU B:34 , ARG B:213 , VAL B:251	binding site for Di-peptide PO4 B 305 and LYS B 29

(no "SS Bond" information available for 5GOZ)

(no "Cis Peptide Bond" information available for 5GOZ)

(no "SAP(SNP)/Variant" information available for 5GOZ)

(no "PROSITE Motif" information available for 5GOZ)

(no "Exon" information available for 5GOZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.hhhhhhhhh....eeeehhhhhhhhhhh.........hhhhhhhhhhh.......eeeeee....hhhhhhhh....eeeeeee................hhh.eeee...hhhhh......eeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.eee...........eeee.....hhhhhhhhhhhhhhhhhhh.....eeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5goz A   4 TGETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGKVIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGTRA 265
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.hhhhhhhhhh...eee.hhhhhh..............hhhhhhhhhhh.......eeeeee....hhhhhhhh....eeeeeee......................ee...hhhhh......eeee.......hhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.eee...........eeee.....hhhhhhhhhhhhhhhhhh......eee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5goz B   4 TGETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGKVIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGTR 264
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

Chain C from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..hhhhhhhhh....eeeehhhhhhhhh...........hhhhhhhhhhh.......eeeeee....hhhhhhhh....eeeeeee................hhh.eeee...hhhhh......eeee.......hhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhh.eee...........eeee.....hhhhhhhhhhhhhhhhhhh.....eeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5goz C   4 TGETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGKVIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGTR 264
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

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	H9A910_ZIKV \| H9A910
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	H9A910_ZIKV \| H9A910	:	5gp1 5gxj 5gzn 5gzo 5kqr 5kqs 5m5b
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	A0A024B7W1_Z \| A0A024B7W1	:	5gp1 5h30 5h32 5h37 5ire 5iz7 5jmt 5kqr 5kqs 5kve 5lbs 5lbv 5lcv 5m5b 5mrk 5u4w 5uhy

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (44, 44)

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