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(-) Description

Title :  CRYSTAL STRUCTURE OF ZIKA VIRUS NS3 HELICASE
 
Authors :  H. Tian, X. Ji, X. Yang, W. Xie, K. Yang, C. Chen, C. Wu, H. Chi, Z. Mu, Z. Wan
Date :  29 Apr 16  (Deposition) - 25 May 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Zika, Ns3, Helicase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Tian, X. Ji, X. Yang, W. Xie, K. Yang, C. Chen, C. Wu, H. Chi, Z. Mu, Z. Wang, H. Yang
The Crystal Structure Of Zika Virus Helicase: Basis For Antiviral Drug Design
Protein Cell V. 7 450 2016
PubMed-ID: 27172988  |  Reference-DOI: 10.1007/S13238-016-0275-4

(-) Compounds

Molecule 1 - NS3 HELICASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1674-2119
    Organism Common: ZIKV
    Organism Scientific: ZIKA VIRUS
    Organism Taxid: 64320
    Strain: MR 766

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JMT)

(-) Sites  (0, 0)

(no "Site" information available for 5JMT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JMT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:252 -Ser A:253
2Gly A:444 -Pro A:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JMT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JMT)

(-) Exons   (0, 0)

(no "Exon" information available for 5JMT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...eeee..........hhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.....ee..............eeeeehhhhhhhhhh........eeeee.....hhhhhhhhhhhhhhhhh...eeeee.................eeeee...........hhhhhh....eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...eeee.............eeee..eeeeeeee...eeeeeeeee.hhhhhhhhhh..........eeeee...........hhhhhhhhhhh............hhhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhh......hhhhh..hhhhh.ee..ee.eee.....eee......hhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jmt A 175 PVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR 617
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JMT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JMT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JMT)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Sites
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  Cis Peptide Bonds
    Gly A:444 - Pro A:445   [ RasMol ]  
    His A:252 - Ser A:253   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A024B7W1_Z | A0A024B7W1: 5goz 5gp1 5h30 5h32 5h37 5ire 5iz7 5kqr 5kqs 5kve 5lbs 5lbv 5lcv 5m5b 5mrk 5u4w 5uhy

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JMT)