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(-)Asym./Biol. Unit
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(-) Description

Title :  ZIKA VIRUS NS2B-NS3 PROTEASE
 
Authors :  H. Yang, X. Chen, X. Ji, Y. Xiong, K. Yang
Date :  18 Sep 16  (Deposition) - 03 May 17  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apo-State, Zika Virus, Protease, Activation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, X. Chen, X. Ji, Y. Xiong, K. Yang, C. Wu
Viral Protease Activation Mechanism
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FLAVIVIRUS_NS2B,LINKER,PEPTIDASE S7
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1420-1464,UNP RESIDUES 1503-1672
    Organism Scientific: ZIKA VIRUS, SYNTHETIC CONSTRUCT
    Organism Taxid: 64320, 32630
    Strain: MR 766

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GXJ)

(-) Sites  (0, 0)

(no "Site" information available for 5GXJ)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1143 -B:1143

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:1120 -Gly A:1121
2Asp B:1120 -Gly B:1121

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GXJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GXJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5GXJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..............eeeeeeee....eeeeeeeeee..eeeehhhhhh...eee..eee.eeeee....eeee...............eeeee.......eeeee..eeee....eeee............eee.....eeee...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gxj A   50 DMYIERAGDITWEKDAEVTTTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKN 1158
                                    59      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158
                                             68|                                                                                                                                            
                                            1018                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee..............eeeeeeeee....eeeeeeeee..eeeehhhhhh...eee..eee.eeeee....eeee...............eeeee.......eeeee..eeee....eeee............eee.....eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5gxj B   48 SVDMYIERAGDITWEKDAEVTTTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKN 1158
                                    57        67||    1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156  
                                               68|                                                                                                                                            
                                              1018
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GXJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GXJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GXJ)

(-) Gene Ontology  (44, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5gxj)
 
  Cis Peptide Bonds
    Asp A:1120 - Gly A:1121   [ RasMol ]  
    Asp B:1120 - Gly B:1121   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H9A910_ZIKV | H9A910: 5goz 5gp1 5gzn 5gzo 5kqr 5kqs 5m5b

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GXJ)