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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COHSCAC2-XDOCCIPA TYPE II COMPLEX FROM CLOSTRIDIUM THERMOCELLUM
 
Authors :  A. L. Carvalho, J. L. A Bras, S. H. Najmudin, B. A. Pinheiro, C. M. G. A. Fo
Date :  23 May 16  (Deposition) - 05 Apr 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Carbohydrate Binding Protein, Cohesin-Dockerin Complex, Type Ii Interaction, Scaffoldin, Cellulosome, C. Thermocellum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Bras, B. A. Pinheiro, K. Cameron, F. Cuskin, A. Viegas, S. Najmudin, P. Bule, V. M. Pires, M. J. Romao, E. A. Bayer, H. L. Spencer S. Smith, H. J. Gilbert, V. D. Alves, A. L. Carvalho, C. M. Fontes
Diverse Specificity Of Cellulosome Attachment To The Bacterial Cell Surface.
Sci Rep V. 6 38292 2016
PubMed-ID: 27924829  |  Reference-DOI: 10.1038/SREP38292

(-) Compounds

Molecule 1 - CELLULOSOME ANCHORING PROTEIN COHESIN REGION
    Atcc: 27405
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 511693
    Expression System Vector: PET28
    Expression System Vector Type: PLASMID
    Fragment: SECOND COHESIN DOMAIN
    Organism Scientific: RUMINICLOSTRIDIUM THERMOCELLUM AD2
    Organism Taxid: 1138384
 
Molecule 2 - CELLULOSOMAL-SCAFFOLDING PROTEIN A
    Atcc: 27405
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET28
    Expression System Vector Type: PLASMID
    Fragment: DOCKERIN DOMAIN
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 203119
    Synonym: CELLULOSE-INTEGRATING PROTEIN A, CELLULOSOMAL GLYCOPROTEIN S1/SL, COHESIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:135 , ASN B:137 , ASN B:139 , ALA B:141 , ASP B:146BINDING SITE FOR RESIDUE CA B 1164
2AC2SOFTWARELYS B:102 , VAL B:104 , ASP B:106 , SER B:108 , ASP B:113BINDING SITE FOR RESIDUE CA B 1165

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G5D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G5D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G5D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G5D)

(-) Exons   (0, 0)

(no "Exon" information available for 5G5D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........eeeeeeeee....eeeeeeeee.....eeee.....................hhhhh...ee.......eeeeeee..hhhhhhhh......eeeeeeeeee........ee............eeeee.........eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g5d A   4 AHIALELDKTKVKVGDVIVATVKAKNMTSMAGIQVNIKYDPEVLQAIDPATGKPFTKETLLVDPELLSNREYNPLLTAVNDINSGIINYASCYVYWDSYRESGVSESTGIIGKVGFKVLKAANTTVKLEETRFTPNSIDGTLVIDWYGQQIVGYKVIQPD 163
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163


Chain B from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhh..eeee.....eee.....eeeeeee..eeeeeeeeee..eee.eeeeeeee............eeeeeee.......hhhhhhhhhh...ee......hhhhh.....eehhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5g5d B   8 GYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIANVVVTGDTSVSTSQAPIMMWVGKIVKDNSINLLDVAEVIRCFNATKGSANYVEELDINRNGAINMQDIMIVHKHFGATSSDYDA 163
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G5D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G5D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G5D)

(-) Gene Ontology  (10, 13)

Asymmetric Unit(hide GO term definitions)

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  5g5d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CIPA_CLOTH | Q06851: 1anu 1aoh 1nbc 1ohz 2b59 2ccl 3kcp 4b9f
        SLAP2_CLOTH | Q06853: 5k39

(-) Related Entries Specified in the PDB File

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