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(-) Description

Title :  THE TYPE II COHESIN DOCKERIN COMPLEX FROM CLOSTRIDIUM THERMOCELLUM
 
Authors :  A. Viegas, B. Pinheiro, J. L. A. Bras, M. J. Romao, V. Alves, A. L. Carvalh C. M. G. A. Fontes
Date :  19 May 16  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A,B
Keywords :  S-Layer, Secreted, Cell Wall, Membrane Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Bras, B. A. Pinheiro, K. Cameron, F. Cuskin, A. Viegas, S. Najmudin, P. Bule, V. M. Pires, M. J. Romao, E. A. Bayer, H. L. Spencer S. Smith, H. J. Gilbert, V. D. Alves, A. L. Carvalho, C. M. Fontes
Diverse Specificity Of Cellulosome Attachment To The Bacterial Cell Surface.
Sci Rep V. 6 38292 2016
PubMed-ID: 27924829  |  Reference-DOI: 10.1038/SREP38292

(-) Compounds

Molecule 1 - CELLULOSOME ANCHORING PROTEIN COHESIN REGION
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PCF1
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: COHESION 2 DOMAIN, RESIDUES 205-364
    Gene: AD2_00639
    Organism Scientific: RUMINICLOSTRIDIUM THERMOCELLUM 27405
    Organism Taxid: 1249482
 
Molecule 2 - DOCKERIN MODULE FROM A PROTEIN OF UNKNOWN FUNCTION
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 2015-2177
    Gene: CTHE_1806
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM 27405
    Organism Taxid: 1249482
    Synonym: PROTEIN CIPB DOCKERIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:101 , ASP B:109 , ALA B:111 , ASP B:116 , HOH B:358 , HOH B:363binding site for residue CA B 201
2AC2SOFTWAREASP B:138 , ASN B:140 , ASP B:142 , ALA B:144 , ASP B:149 , HOH B:302binding site for residue CA B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K39)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K39)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K39)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K39)

(-) Exons   (0, 0)

(no "Exon" information available for 5K39)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...ee....eeeeeeeee....eeeeeeeee.....eeee.....................hhhh.eeeee.......eeeeeeee.hhhhhhhhh.....eeeeeeeeee........ee............eeeee.........eee.....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k39 A   3 SAHIALELDKTKVKVGDVIVATVKAKNMTSMAGIQVNIKYDPEVLQAIDPATGKPFTKETLLVDPELLSNREYNPLLTAVNDINSGIINYASCYVYWDSYRESGVSESTGIIGKVGFKVLKAANTTVKLEETRFTPNSIDGTLVIDWYGQQIVGYKVIQPDLEHHHH 169
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhh..eeee.....eee.....eeeeeee.....eeeeeee......eeeeee...eee.......ee................hhhhhhhhhhhh.........hhhhh.......hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k39 B   7 DKTTVSGYISVDFDYPPESESKIKSGFNVKVAGTELSTKTDEKGYFEISGIPGDMREFTLEISKRNYLKRNVTVNGTGKLVVSTEDNPLILWAGDVERKGVQDNAINMVDVMEISKVFGTRAGDEEYVAELDLNMDGAINLFDIAIVIRHFNA 159
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K39)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K39)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K39)

(-) Gene Ontology  (6, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        SLAP2_CLOTH | Q06853: 5g5d

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