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(-) Description

Title :  STRUCTURE OF RECOMBINANT GRANULOVIRUS POLYHEDRIN
 
Authors :  R. D. Bunker, E. Chiu, P. Metcalf
Date :  02 May 16  (Deposition) - 22 Feb 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Viral Protein, Native Crystals, Nano Crystallography, In Vivo Crystallization, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Gati, D. Oberthuer, O. Yefanov, R. D. Bunker, F. Stellato, E. Chiu, S. M. Yeh, A. Aquila, S. Basu, R. Bean, K. R. Beyerlein, S. Botha, S. Boutet, D. P. Deponte, R. B. Doak, R. Fromme, L. Galli, I. Grotjohann D. R. James, C. Kupitz, L. Lomb, M. Messerschmidt, K. Nass, K. Rendek, R. L. Shoeman, D. Wang, U. Weierstall, T. A. White, G. J. Williams, N. A. Zatsepin, P. Fromme, J. C. Spence, K. N. Goldie, J. A. Jehle, P. Metcalf, A. Barty, H. N. Chapman
Atomic Structure Of Granulin Determined From Native Nanocrystalline Granulovirus Using An X-Ray Free-Electron Laser.
Proc. Natl. Acad. Sci. V. 114 2247 2017 U. S. A.
PubMed-ID: 28202732  |  Reference-DOI: 10.1073/PNAS.1609243114

(-) Compounds

Molecule 1 - GRANULOVIRUS POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Common: CPGV
    Organism Scientific: CYDIA POMONELLA GRANULOVIRUS
    Organism Taxid: 28289

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5G3X)

(-) Sites  (0, 0)

(no "Site" information available for 5G3X)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:135 -A:135

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:110 -Pro A:111
2Gly A:245 -Pro A:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G3X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G3X)

(-) Exons   (0, 0)

(no "Exon" information available for 5G3X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeee...eeee....hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeee........eeeeeeee.........eee....ee.....eeeee.......hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g3x A  12 HDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRRVHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQDPYYVGPNNIERINLSKVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDVPLFTGPAY 248
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    || 193       203       213       223       233       243     
                                                                                                                                                                                              176|                                                           
                                                                                                                                                                                               189
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G3X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G3X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G3X)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Gly A:245 - Pro A:246   [ RasMol ]  
    Phe A:110 - Pro A:111   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GRAN_GVCPM | P87577: 5g0z 5mnd

(-) Related Entries Specified in the PDB File

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